Structure of the Energy Landscape of Short Peptides

We have simulated, as a showcase, the pentapeptide Met-enkephalin (Tyr-Gly-Gly-Phe-Met) to visualize the energy landscape and investigate the conformational coverage by the multicanonical method. We have obtained a three-dimensional topographic picture of the whole energy landscape by plotting the histogram with respect to energy(temperature) and the order parameter, which gives the degree of resemblance of any created conformation with the global energy minimum (GEM).Comment: 17 pages, 4 figure

Antifungal and antibacterial effects of some acrocarpic mosses

In this study, the antifungal and antibacterial effect of 6 different  acrocarpous mosses were tested in vitro aganist 8 different  microorganisms. For the extraction, ethyl alcohol, methyl alcohol, acetone and chloroform were used as solvents. While the highest antimicrobial effect was seen in methyl alcohol extracts, extracts of chloroform showed the lowest level of antimicrobial effect. Grimmia anodon Bruch & Schimp. which is one of the acrocarp mosses used in this study, showed the highest activity in termsof the number of microorganism affected. Tortella tortuosa (Hedw.) Limpr. only has effect on Candida albicans ATCC 16231 strain. All the results were compared with standard antibiotic discs, ketoconazole (50 ìg), ampicillin (10 ìg), eritromycin (15 ìg) and vancomycin (30 ìg).Key words: Moss, acrocarpous, antimicrobial effect

Investigation of antimicrobial activity of some Turkish pleurocarpic mosses

In this study, the antimicrobial activities of different extracts from the five pleurocarpic mosses (Platyhypnidium riparioides (Hedw.) Dixon, Leucodon sciuroides (Hedw.) Schwägr., Hypnum cupressiforme Hedw., Homalothecium sericeum (Hedw.) Br.Eur., and Anomodon viticulosus (Hedw.) Hook & Taylor.) were tested aganist eight bacterial and fungal strains. For the extraction, four different solvents (ethyl alcohol, methyl alcohol, chloroform and acetone) were used. While methanolic extracts of P. riparioides showed the highest antibacterial effect against the Gram-negative bacterium Pseudomonas aeroginosa ATCC 27853, acetone extract of A. viticulosus showed the highest antifungal effect against the fungus Saccharomyces cerevisiae ATCC. All the results were compared with standard antibiotic discs: ketoconazole (50 μg), amphicillin (10 μg), eritromycin (15 μg), penicillin (10 μg) and vancomycin (30 μg).Key words: Moss, pleurocarpic, antimicrobial activity

h-deformation of Gr(2)

The $h$-deformation of functions on the Grassmann matrix group $Gr(2)$ is presented via a contraction of $Gr_q(2)$. As an interesting point, we have seen that, in the case of the $h$-deformation, both R-matrices of $GL_h(2)$ and $Gr_h(2)$ are the same

Laboratories of Learning: Education, Learning and Knowledge-Making in Social Movements: Insights from Colombia, Nepal, South Africa and Turkey

This synthesis report brings together cross-case insights produced from four case studies of social movements in Colombia, Nepal, South Africa and Turkey. The research that was ably carried out by a committed group of researchers in collaboration with the movements themselves, their leaders and activists, in a dynamic process of research coproduction

Rearing system effects on live weight gain of large white turkeys

The aim of this study was to determine the effect of three production systems on live weight gain (LWG) of white turkeys by repeated measures analysis of variance (ANOVA) and profile analysis. A total of 81 turkey poults were assigned to intensive (7 male and 19 female), semi-intensive (9 male and 19 female) and extensive groups (11 male and 16 female) at one day old. The poults were wing-banded at day 1 after hatching and weighed individually each week through 16 weeks old. The birds were managed similarly through eight weeks old. After that time, the intensive group was fed concentrated feed indoors. The birds of the semi-intensive group had access to pasture for eight hours a day, and received 50% of the concentrated feed that was consumed by the intensive group. The birds in the extensive group were kept outdoors with shade and grazed on pasture, but did not receive concentrated feed. The bi-weekly LWG of the extensive, intensive and semi-intensive groups were 1191.4 g, 990.6 g and 872.1 g, respectively. Through the 16 weeks of the trial, the effects on LWG of production system, age, and interaction of age and production system were highly significant (P <0.01) in the repeated measures ANOVA. The profile analysis also showed highly significant (P <0.01) production system effects and interaction of production system and age on LWG. Scheffe’s test indicated that the intensive, semi-intensive, and extensive treatments differed (P <0.05)

Mating type idiomorphs of Pyrenophora teres in Turkey

Pyrenophora teres f. maculata (Ptm) and Pyrenophora teres f. teres (Ptt) causes spot form and net form of net blotch diseases of barley, respectively. Although both forms of P. teres are morphologically similar, their symptoms and genetic background differ. In this study, 175 single spore (109 Ptm and 66 Ptt) isolates obtained from different regions of Turkey were evaluated for their mating type distribution and prevalence. Fungal isolates of both forms were verified using species-speci.c polymerase chain reaction (PCR) primers. For mating type determination studies, duplex PCR was performed using MAT-specific single nucleotide polymorphism primers. Sixty and 49 of 109 Ptm isolates were found as MAT1-1 and MAT1-2 types, respectively and 43 and 23 of 66 Ptt isolates were found as MAT1-1 and MAT1-2 types, respectively. These results show the possibility of sexual reproduction among the Ptm isolates in Turkey and Ptt population of Central Anatolia, Turkey. However, the overall pattern of Ptt isolates did not support the sexual reproduction hypothesis in Turkey. Sexual reproduction in the life cycle of P. teres is important since it could lead to genetic and pathogenic variation. As a result of new sexual combinations more virulent pathotypes of P. teres may occur

Tutorial services for students at Bilkent University an evaluation after five years

To realize our mission as academic coordinators for engineering students at Bilkent University, we facilitate in different ways tutorial services. These focus on the first year courses for physics, mathematics and computer science, which are courses that turn out to be difficult, as students' comments and grades often show. Most tutorial services are realized in cooperation with the Departments. Senior undergraduate students or graduate students are hired to work as laboratory assistants or as homework graders, or to offer recitation classes. During these classes questions are answered, difficult issues are explained, while many exercises are done to gain the necessary routine for applying the theory. Such classes can form together with theory classes and laboratory sessions a consistent unity of different working forms. Besides these services, which are scheduled regularly and for which participation often is included in the grading, we coordinate tutorials on demand, for students asking for them. Another idea behind the tutorial services is that they give the possibility for advanced students to practice their teaching and communication skills. We organize application procedures, hire the students accepted for the job, follow their work with duty reports to be submitted by them, try to coach them in different ways. By participating in workshops, where special attention is given to strategies for active learning, tutors can work for a teaching certificate. After they finished their job satisfactorily, tutors may ask for a 'thank you letter', as a useful academic reference. Everything considered, although the infrastructure for the tutorial services is quite challenging, they form a useful tool for our mission as student coordinators