Changes in the algal composition, bacterial metabolic activity and element content of biofilms developed on artificial substrata in the early phase of colonization

Changes in the algal composition and metabolic profiles of bacterial communities as well as the inorganic components were studied on artificial substrata during the early phase of biofilm formation under laboratory conditions in September 2002 and 2003. Sterile Perspex and polished quartz glass discs with a diameter of 3 cm were placed into a Perspex rack, which was immersed vertically in an aquarium containing water from a shallow soda lake. The temperature was kept constant and sufficient oxygen supply was provided. The samples were illuminated for 12 hours a day. Periphyton communities were sampled from 2 to 126 hours of exposure. In both experiments, the alteration of the number of algal species and cells as well as the carbon source utilization of microbial communities was logarithmic. In the two years, considerable differences were revealed in the magnitude of algal cell numbers. The proportion of benthic and planktonic algae showed an undulating pattern in the second experiment. One of the dominant benthic species was the diatom Achnanthidium minutissimum Kütz., while that of the planktonic, the cyanobacterium Microcystis aeruginosa Kütz. During the experiments an increase in the bacterial activities could be observed; the higher the microbial diversity and abundance that was detected, the more BIOLOG carbon sources were utilized. The examined element contents indicated interactions among algae and bacteria in the biofilms from the beginning of the colonization processes

Comparative algological and bacteriological examinations on biofilms developed on different substrata in a shallow soda lake

According to the European Water Framework Directives, benthic diatoms of lakes are a tool for ecological status assessment. In this study, we followed an integrative sample analysis approach, in order to find an appropriate substratum for the water qualification-oriented biomonitoring of a shallow soda lake, Lake Velencei. Six types of substrata (five artificial and one natural), i.e., andesite, granite, polycarbonate, old reed stems, Plexiglass discs and green reed, were sampled in May and in November. We analysed total alga and diatom composition, chlorophyll a content of the periphyton, surface tension and roughness of the substrata and carbon source utilisation of microbial communities. Water quality index was calculated based on diatom composition. Moreover, using a novel statistical tool, a self-organising map, we related algal composition to substratum types. Biofilms on plastic substrates deviated to a great extent from the stone and reed substrata, with regard to the parameters measured, whereas the biofilms developing on reed and stone substrata were quite similar. We conclude that for water quality monitoring purposes, sampling from green reed during springtime is not recommended, since this is the colonization time of periphyton on the newly growing reed, but it may be appropriate from the second half of the vegetation period. Stone and artificially placed old reed substrata may be appropriate for biomonitoring of shallow soda lakes in both spring and autumn since they showed in both seasons similar results regarding all measured features

Diurnal course analysis of the WRF-simulated and observation-based planetary boundary layer height

Weather Research and Forecasting (WRF) single-column model simulations were performed in the late summer of 2012 in order to analyse the diurnal changes of the planetary boundary layer (PBL). Five PBL schemes were tested with the WRF. From the radiometer and wind-profiler measurements at one station, derived PBL heights were also compared to the simulations. The weather conditions during the measurement period proved to be dry; the soil moisture was below wilting point 85 percent of the time. Results show that (1) simulation-based PBL heights are overestimated by about 500–1000 m with respect to the observation-based PBL heights, and (2) PBL height deviations between different observation-based methods (around 700 m in the midday) are comparable with PBL height deviations between different model schemes used in the WRF single-column model. The causes of the deviations are also discussed. It is shown that in the estimation of the PBL height the relevance of the atmospheric profiles could be as important as the relevance of the estimation principles

Quality assurance of diatom counts in Europe: towards harmonized datasets

Investigations on organism ecology, biodiversity and biogeography often use large compiled datasets to extract information on species ecological preferences, which then can be used in environmental assessment. Freshwater benthic diatoms are commonly used in this context. However, it is important that the taxonomic information of the separate diatom datasets is compatible. At present, inconsistencies between diatom datasets, mainly due to differences and uncertainties in diatom identification, may misinform diatom taxon-specific ecological preferences, geographical distribution and water quality assessment. It is our opinion that these inconsistencies in diatom datasets can be reduced with quality assurance (QA), such as identification exercises. However, the results of these exercises must be well documented and well communicated; otherwise, gained knowledge may not spread inter-regionally or internationally. As a first step to reach greater consistency in QA/harmonization studies, this article (1) presents and compares information of existing diatom identification and counting QA from published and grey (non-peer reviewed) European literature to identify advantages and drawbacks of each approach; (2) summarizes taxa that can easily be misidentified according to European identification exercises; and (3) suggests a consistent design of identification exercises for diatom dataset QA

Divergence across mitochondrial genomes of sympatric members of the Schistosoma indicum group and clues into the evolution of Schistosoma spindale

Schistosoma spindale and Schistosoma indicum are ruminant-infecting trematodes of the Schistosoma indicum group that are widespread across Southeast Asia. Though neglected, these parasites can cause major pathology and mortality to livestock leading to significant welfare and socio-economic issues, predominantly amongst poor subsistence farmers and their families. Here we used mitogenomic analysis to determine the relationships between these two sympatric species of schistosome and to characterise S. spindale diversity in order to identify possible cryptic speciation. The mitochondrial genomes of S. spindale and S. indicum were assembled and genetic analyses revealed high levels of diversity within the S. indicum group. Evidence of functional changes in mitochondrial genes indicated adaptation to environmental change associated with speciation events in S. spindale around 2.5 million years ago. We discuss our results in terms of their theoretical and applied implications