C2M: Configurable Chemical Middleware

One of the vexing problems that besets concurrent use of multiple, heterogeneous resources is format multiplicity. C2M aims to equip scientists with a wrapper generator on their desktop. The wrapper generator can build wrappers, or converters that can convert data from or into different formats, from a high-level description of the formats. The language in which such a high-level description is expressed is easy enough for scientists to be able to write format descriptions at minimal cost. In C2M, wrappers and documentation for human reading are automatically obtained from the same user-supplied specifications. Initial experiments demonstrate that the idea can, indeed, lead to the advent of usergoverned wrapper generators. Future research will consolidate the code and extend the approach to a realistic variety of formats

Leveraging legacy codes to distributed problem solving environments: A web service approach

This paper describes techniques used to leverage high performance legacy codes as CORBA components to a distributed problem solving environment. It first briefly introduces the software architecture adopted by the environment. Then it presents a CORBA oriented wrapper generator (COWG) which can be used to automatically wrap high performance legacy codes as CORBA components. Two legacy codes have been wrapped with COWG. One is an MPI-based molecular dynamic simulation (MDS) code, the other is a finite element based computational fluid dynamics (CFD) code for simulating incompressible Navier-Stokes flows. Performance comparisons between runs of the MDS CORBA component and the original MDS legacy code on a cluster of workstations and on a parallel computer are also presented. Wrapped as CORBA components, these legacy codes can be reused in a distributed computing environment. The first case shows that high performance can be maintained with the wrapped MDS component. The second case shows that a Web user can submit a task to the wrapped CFD component through a Web page without knowing the exact implementation of the component. In this way, a user’s desktop computing environment can be extended to a high performance computing environment using a cluster of workstations or a parallel computer

ENHANCEMENT OF INFORMATION MANAGEMENT CAPABILITIES IN MDO FRAMEWORK

Multidisciplinary Design Optimization (MDO) frameworks have been developed to facilitate the integration of disciplinary analysis codes and optimization techniques. Recent advances in MDO frameworks have addressed issues related to data exchange, distributed computing, process integration and trade study. However, managing, storing and sharing MDO problem information have not yet been fully addressed. In this research a software configuration is proposed. The configuration is built upon a structured repository, common file system and software applications. The configuration is integrated into a commercially available MDO framework to manage, store and share MDO problem information. A common file system proposed in this research provides a structure to store MDO components and enable sharing of components over the network. The ModelCenter framework is selected for the integration of the repository based on the evaluation of the MDO frameworks against a set of extended information management requirements. The repository is a relational database which provides an information model to store information related to MDO problems. A Java interface is utilized to provide access to the structured repository and the common file system in the ModelCenter framework. Java applications are developed to demonstrate the benefits offered by the proposed repository and the common file system. The proposed features and the Java applications are tested for the functionality and performance utilizing IEEE software testing standards

Coordinating Heterogeneous Web Services through Handhelds using SyD’s Wrapper Framework

Tying web services together to build large, distributed, collaborative applications has gathered noticeable momentum and a lot of research is being put in it. Along with composition of the web services, coordination is one key aspect that has been considered keenly. Many frameworks, languages and protocols have been proposed for web service composition and coordination. With the advancement in wireless technology and rapid deployment of mobile services, collaborative application development for small devices using such composed web services finds a new research area. Much less work has been done in the area of web service coordination for mobile environment. In this thesis, we propose a new distributed approach in service composition and coordination and show that our approach works well in an environment containing mobile heterogeneous devices. We discuss a novel approach of SyD (System on Devices)wrapper framework for dynamically creating and executing web bonds among various heterogeneous web services. The wrapper is a lightweight SyD application object that encapsulates composition and coordination logic and provides higher level of coordination among bonded entities. The wrapper framework gives small devices full capability to run distributed collaborative applications that use heterogeneous web services. We have also developed and analyzed experiments to showcase the performance of SyD Wrapper Framework

Semiautomatic generation of CORBA interfaces for databases in molecular biology

The amount and complexity of genome related data is growing quickly. This highly interrelated data is distributed at many different sites, stored in numerous different formats, and maintained by independent data providers. CORBA, the industry standard for distributed computing, offers the opportunity to make implementation differences and distribution transparent and thereby helps to combine disparate data sources and application programs. In this thesis, the different aspects of CORBA access to molecular biology data are examined in detail. The work is motivated by a concrete application for distributed genome maps. Then, the different design issues relevant to the implementation of CORBA access layers are surveyed and evaluated. The most important of these issues is the question of how to represent data in a CORBA environment using the interface definition language IDL. Different representations have different advantages and disadvantages and the best representation is highly application specific. It is therefore in general impossible to generate a CORBA wrapper automatically for a given database. On the other hand, coding a server for each application manually is tedious and error prone. Therefore, a method is presented for the semiautomatic generation of CORBA wrappers for relational databases. A declarative language is described, which is used to specify the mapping between relations and IDL constructs. Using a set of such mapping rules, a CORBA server can be generated automatically. Additionally, the declarative mapping language allows for the support of ad-hoc queries, which are based on the IDL definitions

MLGuard: Defend Your Machine Learning Model!

Machine Learning (ML) is used in critical highly regulated and high-stakes fields such as finance, medicine, and transportation. The correctness of these ML applications is important for human safety and economic benefit. Progress has been made on improving ML testing and monitoring of ML. However, these approaches do not provide i) pre/post conditions to handle uncertainty, ii) defining corrective actions based on probabilistic outcomes, or iii) continual verification during system operation. In this paper, we propose MLGuard, a new approach to specify contracts for ML applications. Our approach consists of a) an ML contract specification defining pre/post conditions, invariants, and altering behaviours, b) generated validation models to determine the probability of contract violation, and c) an ML wrapper generator to enforce the contract and respond to violations. Our work is intended to provide the overarching framework required for building ML applications and monitoring their safety.Comment: Accepted in SE4SafeML'2