Semantics, sensors, and the social web: The live social semantics experiments

The Live Social Semantics is an innovative application that encourages and guides social networking between researchers at conferences and similar events. The application integrates data and technologies from the Semantic Web, online social networks, and a face-to-face contact sensing platform. It helps researchers to find like-minded and influential researchers, to identify and meet people in their community of practice, and to capture and later retrace their real-world networking activities at conferences. The application was successfully deployed at two international conferences, attracting more than 300 users in total. This paper describes this application, and discusses and evaluates the results of its two deployment

Implementation of a knowledge discovery and enhancement module from structured information gained from unstructured sources of information

Tese de mestrado integrado. Engenharia Informática e Computação. Faculdade de Engenharia. Universidade do Porto. 201

Automatic Normalization and Annotation for Discovering Semantic Mappings

Schema matching is the problem of finding relationships among concepts across heterogeneous data sources (heterogeneous in format and in structure). Starting from the “hidden meaning” associated to schema labels (i.e. class/attribute names) it is possible to discover relationships among the elements of different schemata. Lexical annotation (i.e. annotation w.r.t. a thesaurus/lexical resource) helps in associating a “meaning” to schema labels. However, accuracy of semi-automatic lexical annotation methods on real-world schemata suffers from the abundance of non-dictionary words such as compound nouns and word abbreviations. In this work, we address this problem by proposing a method to perform schema labels normalization which increases the number of comparable labels. Unlike other solutions, the method semi-automatically expands abbreviations and annotates compound terms, without a minimal manual effort. We empirically prove that our normalization method helps in the identification of similarities among schema elements of different data sources, thus improving schema matching accuracy

Using Neural Networks for Relation Extraction from Biomedical Literature

Using different sources of information to support automated extracting of relations between biomedical concepts contributes to the development of our understanding of biological systems. The primary comprehensive source of these relations is biomedical literature. Several relation extraction approaches have been proposed to identify relations between concepts in biomedical literature, namely, using neural networks algorithms. The use of multichannel architectures composed of multiple data representations, as in deep neural networks, is leading to state-of-the-art results. The right combination of data representations can eventually lead us to even higher evaluation scores in relation extraction tasks. Thus, biomedical ontologies play a fundamental role by providing semantic and ancestry information about an entity. The incorporation of biomedical ontologies has already been proved to enhance previous state-of-the-art results.Comment: Artificial Neural Networks book (Springer) - Chapter 1

Enriching videos with light semantics

This paper describes an ongoing prototypical framework to annotate and retrieve web videos with light semantics. The proposed framework reuses many existing vocabularies along with a video model. The knowledge is captured from three different information spaces (media content, context, document). We also describe ways to extract the semantic content descriptions from the existing usergenerated content using multiple approaches of linguistic processing and Named Entity Recognition, which are later identified with DBpedia resources to establish meanings for the tags. Finally, the implemented prototype is described with multiple search interfaces and retrieval processes. Evaluation on semantic enrichment shows a considerable (50% of videos) improvement in content description

Semi-automated Ontology Generation for Biocuration and Semantic Search

Background: In the life sciences, the amount of literature and experimental data grows at a tremendous rate. In order to effectively access and integrate these data, biomedical ontologies – controlled, hierarchical vocabularies – are being developed. Creating and maintaining such ontologies is a difficult, labour-intensive, manual process. Many computational methods which can support ontology construction have been proposed in the past. However, good, validated systems are largely missing. Motivation: The biocuration community plays a central role in the development of ontologies. Any method that can support their efforts has the potential to have a huge impact in the life sciences. Recently, a number of semantic search engines were created that make use of biomedical ontologies for document retrieval. To transfer the technology to other knowledge domains, suitable ontologies need to be created. One area where ontologies may prove particularly useful is the search for alternative methods to animal testing, an area where comprehensive search is of special interest to determine the availability or unavailability of alternative methods. Results: The Dresden Ontology Generator for Directed Acyclic Graphs (DOG4DAG) developed in this thesis is a system which supports the creation and extension of ontologies by semi-automatically generating terms, definitions, and parent-child relations from text in PubMed, the web, and PDF repositories. The system is seamlessly integrated into OBO-Edit and Protégé, two widely used ontology editors in the life sciences. DOG4DAG generates terms by identifying statistically significant noun-phrases in text. For definitions and parent-child relations it employs pattern-based web searches. Each generation step has been systematically evaluated using manually validated benchmarks. The term generation leads to high quality terms also found in manually created ontologies. Definitions can be retrieved for up to 78% of terms, child ancestor relations for up to 54%. No other validated system exists that achieves comparable results. To improve the search for information on alternative methods to animal testing an ontology has been developed that contains 17,151 terms of which 10% were newly created and 90% were re-used from existing resources. This ontology is the core of Go3R, the first semantic search engine in this field. When a user performs a search query with Go3R, the search engine expands this request using the structure and terminology of the ontology. The machine classification employed in Go3R is capable of distinguishing documents related to alternative methods from those which are not with an F-measure of 90% on a manual benchmark. Approximately 200,000 of the 19 million documents listed in PubMed were identified as relevant, either because a specific term was contained or due to the automatic classification. The Go3R search engine is available on-line under www.Go3R.org

An information retrieval approach to ontology mapping

In this paper, we present a heuristic mapping method and a prototype mapping system that support the process of semi-automatic ontology mapping for the purpose of improving semantic interoperability in heterogeneous systems. The approach is based on the idea of semantic enrichment, i.e., using instance information of the ontology to enrich the original ontology and calculate similarities between concepts in two ontologies. The functional settings for the mapping system are discussed and the evaluation of the prototype implementation of the approach is reported. \ud \u