3D medical volume segmentation using hybrid multiresolution statistical approaches

This article is available through the Brunel Open Access Publishing Fund. Copyright © 2010 S AlZu’bi and A Amira.3D volume segmentation is the process of partitioning voxels into 3D regions (subvolumes) that represent meaningful physical entities which are more meaningful and easier to analyze and usable in future applications. Multiresolution Analysis (MRA) enables the preservation of an image according to certain levels of resolution or blurring. Because of multiresolution quality, wavelets have been deployed in image compression, denoising, and classification. This paper focuses on the implementation of efficient medical volume segmentation techniques. Multiresolution analysis including 3D wavelet and ridgelet has been used for feature extraction which can be modeled using Hidden Markov Models (HMMs) to segment the volume slices. A comparison study has been carried out to evaluate 2D and 3D techniques which reveals that 3D methodologies can accurately detect the Region Of Interest (ROI). Automatic segmentation has been achieved using HMMs where the ROI is detected accurately but suffers a long computation time for its calculations

Learning the dynamics and time-recursive boundary detection of deformable objects

We propose a principled framework for recursively segmenting deformable objects across a sequence of frames. We demonstrate the usefulness of this method on left ventricular segmentation across a cardiac cycle. The approach involves a technique for learning the system dynamics together with methods of particle-based smoothing as well as non-parametric belief propagation on a loopy graphical model capturing the temporal periodicity of the heart. The dynamic system state is a low-dimensional representation of the boundary, and the boundary estimation involves incorporating curve evolution into recursive state estimation. By formulating the problem as one of state estimation, the segmentation at each particular time is based not only on the data observed at that instant, but also on predictions based on past and future boundary estimates. Although the paper focuses on left ventricle segmentation, the method generalizes to temporally segmenting any deformable object

Conditional Density Estimation by Penalized Likelihood Model Selection and Applications

In this technical report, we consider conditional density estimation with a maximum likelihood approach. Under weak assumptions, we obtain a theoretical bound for a Kullback-Leibler type loss for a single model maximum likelihood estimate. We use a penalized model selection technique to select a best model within a collection. We give a general condition on penalty choice that leads to oracle type inequality for the resulting estimate. This construction is applied to two examples of partition-based conditional density models, models in which the conditional density depends only in a piecewise manner from the covariate. The first example relies on classical piecewise polynomial densities while the second uses Gaussian mixtures with varying mixing proportion but same mixture components. We show how this last case is related to an unsupervised segmentation application that has been the source of our motivation to this study.Comment: No. RR-7596 (2011

On Interpretable Approaches to Cluster, Classify and Represent Multi-Subspace Data via Minimum Lossy Coding Length based on Rate-Distortion Theory

To cluster, classify and represent are three fundamental objectives of learning from high-dimensional data with intrinsic structure. To this end, this paper introduces three interpretable approaches, i.e., segmentation (clustering) via the Minimum Lossy Coding Length criterion, classification via the Minimum Incremental Coding Length criterion and representation via the Maximal Coding Rate Reduction criterion. These are derived based on the lossy data coding and compression framework from the principle of rate distortion in information theory. These algorithms are particularly suitable for dealing with finite-sample data (allowed to be sparse or almost degenerate) of mixed Gaussian distributions or subspaces. The theoretical value and attractive features of these methods are summarized by comparison with other learning methods or evaluation criteria. This summary note aims to provide a theoretical guide to researchers (also engineers) interested in understanding 'white-box' machine (deep) learning methods