3D Scanning System for Automatic High-Resolution Plant Phenotyping

Thin leaves, fine stems, self-occlusion, non-rigid and slowly changing structures make plants difficult for three-dimensional (3D) scanning and reconstruction -- two critical steps in automated visual phenotyping. Many current solutions such as laser scanning, structured light, and multiview stereo can struggle to acquire usable 3D models because of limitations in scanning resolution and calibration accuracy. In response, we have developed a fast, low-cost, 3D scanning platform to image plants on a rotating stage with two tilting DSLR cameras centred on the plant. This uses new methods of camera calibration and background removal to achieve high-accuracy 3D reconstruction. We assessed the system's accuracy using a 3D visual hull reconstruction algorithm applied on 2 plastic models of dicotyledonous plants, 2 sorghum plants and 2 wheat plants across different sets of tilt angles. Scan times ranged from 3 minutes (to capture 72 images using 2 tilt angles), to 30 minutes (to capture 360 images using 10 tilt angles). The leaf lengths, widths, areas and perimeters of the plastic models were measured manually and compared to measurements from the scanning system: results were within 3-4% of each other. The 3D reconstructions obtained with the scanning system show excellent geometric agreement with all six plant specimens, even plants with thin leaves and fine stems.Comment: 8 papes, DICTA 201

3D Point Cloud Denoising via Deep Neural Network based Local Surface Estimation

We present a neural-network-based architecture for 3D point cloud denoising called neural projection denoising (NPD). In our previous work, we proposed a two-stage denoising algorithm, which first estimates reference planes and follows by projecting noisy points to estimated reference planes. Since the estimated reference planes are inevitably noisy, multi-projection is applied to stabilize the denoising performance. NPD algorithm uses a neural network to estimate reference planes for points in noisy point clouds. With more accurate estimations of reference planes, we are able to achieve better denoising performances with only one-time projection. To the best of our knowledge, NPD is the first work to denoise 3D point clouds with deep learning techniques. To conduct the experiments, we sample 40000 point clouds from the 3D data in ShapeNet to train a network and sample 350 point clouds from the 3D data in ModelNet10 to test. Experimental results show that our algorithm can estimate normal vectors of points in noisy point clouds. Comparing to five competitive methods, the proposed algorithm achieves better denoising performance and produces much smaller variances

Depth map compression via 3D region-based representation

In 3D video, view synthesis is used to create new virtual views between encoded camera views. Errors in the coding of the depth maps introduce geometry inconsistencies in synthesized views. In this paper, a new 3D plane representation of the scene is presented which improves the performance of current standard video codecs in the view synthesis domain. Two image segmentation algorithms are proposed for generating a color and depth segmentation. Using both partitions, depth maps are segmented into regions without sharp discontinuities without having to explicitly signal all depth edges. The resulting regions are represented using a planar model in the 3D world scene. This 3D representation allows an efficient encoding while preserving the 3D characteristics of the scene. The 3D planes open up the possibility to code multiview images with a unique representation.Postprint (author's final draft

Point Cloud Framework for Rendering 3D Models Using Google Tango

This project seeks to demonstrate the feasibility of point cloud meshing for capturing and modeling three dimensional objects on consumer smart phones and tablets. Traditional methods of capturing objects require hundreds of images, are very slow and consume a large amount of cellular data for the average consumer. Software developers need a starting point for capturing and meshing point clouds to create 3D models as hardware manufacturers provide the tools to capture point cloud data. The project uses Googles Tango computer vision library for Android to capture point clouds on devices with depth-sensing hardware. The point clouds are combined and meshed as models for use in 3D rendering projects. We expect our results to be embraced by the Android market because capturing point clouds is fast and does not carry a large data footprint

On the fine structure of the quiet solar \Ca II K atmosphere

We investigate the morphological, dynamical, and evolutionary properties of the internetwork and network fine structure of the quiet sun at disk centre. The analysis is based on a $\sim$6 h time sequence of narrow-band filtergrams centred on the inner-wing \Ca II K$_{\rm 2v}$ reversal at 393.3 nm. The results for the internetwork are related to predictions derived from numerical simulations of the quiet sun. The average evolutionary time scale of the internetwork in our observations is 52 sec. Internetwork grains show a tendency to appear on a mesh-like pattern with a mean cell size of $\sim$4-5 arcsec. Based on this size and the spatial organisation of the mesh we speculate that this pattern is related to the existence of photospheric downdrafts as predicted by convection simulations. The image segmentation shows that typical sizes of both network and internetwork grains are in the order of 1.6 arcs.Comment: 8 pages, 9 figure

Self-correction of 3D reconstruction from multi-view stereo images

We present a self-correction approach to improving the 3D reconstruction of a multi-view 3D photogrammetry system. The self-correction approach has been able to repair the reconstructed 3D surface damaged by depth discontinuities. Due to self-occlusion, multi-view range images have to be acquired and integrated into a watertight nonredundant mesh model in order to cover the extended surface of an imaged object. The integrated surface often suffers from “dent” artifacts produced by depth discontinuities in the multi-view range images. In this paper we propose a novel approach to correcting the 3D integrated surface such that the dent artifacts can be repaired automatically. We show examples of 3D reconstruction to demonstrate the improvement that can be achieved by the self-correction approach. This self-correction approach can be extended to integrate range images obtained from alternative range capture devices