Segmentation Of Retinal Vasculature Using Contourlet Enhancement For Early Detection Of Diabetic Retinapthy

In this project we use contourlet transform rather than wavelet transform because the contourlet transform was proven to require less number of coefficient compared to wavelet and contourlet also have the ability to detect directional signal. The enhanced blood vessel will be extract by BottomHat. This transformation works by isolating dark object on light surrounding

Investigation of bottom fishing impacts on benthic structure using multibeam sonar, sidescan and video

Bottom fishing gear is known to alter benthic structure, however changes in the shape of the sea floor are often too subtle to be detected by acoustic remote sensing. Nonetheless, long linear features were observed during a recent high-resolution multibeam sonar survey of Jeffreys Ledge, a prominent fishing ground in Gulf of Maine, located about 50 km from Portsmouth, NH. These marks, which have a relief of only few centimeters, are presumed to be caused by bottom dredging gear used in the area for scallop and clam fisheries. The extraction of these small features from a noisy data set (including several instrumental artifacts) presented a number of challenges. To enhance the detection and identification of these features, data artifacts were identified and removed selectively using frequency filtering. Verification was attempted with sidescan sonar and video surveys. While clearly visible on the sidescan sonar records, the bottom marks were not discernable in the video survey. The inability to see the bottom marks with video may be related to the age of the marks, and has important ramifications about appropriate methodologies for quantifying gear impact. Results from multibeam sonar, sidescan sonar and video surveys suggest that the best methodology to deal with inspection of bottom fishing marks is to integrate data in a 3D GIS-like environment

YOLO-Angio: An Algorithm for Coronary Anatomy Segmentation

Coronary angiography remains the gold standard for diagnosis of coronary artery disease, the most common cause of death worldwide. While this procedure is performed more than 2 million times annually, there remain few methods for fast and accurate automated measurement of disease and localization of coronary anatomy. Here, we present our solution to the Automatic Region-based Coronary Artery Disease diagnostics using X-ray angiography images (ARCADE) challenge held at MICCAI 2023. For the artery segmentation task, our three-stage approach combines preprocessing and feature selection by classical computer vision to enhance vessel contrast, followed by an ensemble model based on YOLOv8 to propose possible vessel candidates by generating a vessel map. A final segmentation is based on a logic-based approach to reconstruct the coronary tree in a graph-based sorting method. Our entry to the ARCADE challenge placed 3rd overall. Using the official metric for evaluation, we achieved an F1 score of 0.422 and 0.4289 on the validation and hold-out sets respectively.Comment: MICCAI Conference ARCADE Grand Challenge, YOLO, Computer Vision

Algorithms for the automatic tracking of the blood vessels network in retinal images acquired by RetCam in newborns

L’obiettivo di questo lavoro di tesi è la realizzazione di una serie di algoritmi capaci di tracciare automaticamente i vasi retinici in immagini acquisite tramite RetCam (field of view=130°) da neonati prematuri. I neonati prematuri rischiano infatti di sviluppare una patologia (Retinopatia del Prematuro) che se non correttamente trattata può portare al distacco retinico e alla cecità. L’analisi del fondo oculare è l’unico modo per determinare la condizione del paziente ma decidere se intervenire o meno in un neonato dovrebbe essere una decisione basata su dati oggettivi e su un protocollo ben definito. Il tracciamento automatico dei vasi retinici in immagini RetCam è un processo complicato data la scarsa qualità delle immagini da elaborare, soprattutto per la trasparenza della retina nei neonati e per il basso contrasto delle immagini, ma rappresenta uno step fondamentale per la successiva valutazione automatica della condizione della retina sotto esame. In questo lavoro sono state considerate 20 immagini, di cui è stato realizzato il tracciamento manuale per determinare la performance del sistema implementato. Fra le 20 immagini ne sono state scelte 6 per allenare un classificatore che , a partire dalle immagini filtrate, distingueva ogni segmento dell’immagine come appartenente o meno alla rete di vasi retinici. il risultato finale è dato dalla combinazione delle 2 classificazioni disponibili per ogni immagine ed è caratterizzato da un’immagine binaria avente i vasi retinici bianchi su sfondo ner

Left-invariant evolutions of wavelet transforms on the Similitude Group

Enhancement of multiple-scale elongated structures in noisy image data is relevant for many biomedical applications but commonly used PDE-based enhancement techniques often fail at crossings in an image. To get an overview of how an image is composed of local multiple-scale elongated structures we construct a multiple scale orientation score, which is a continuous wavelet transform on the similitude group, SIM(2). Our unitary transform maps the space of images onto a reproducing kernel space defined on SIM(2), allowing us to robustly relate Euclidean (and scaling) invariant operators on images to left-invariant operators on the corresponding continuous wavelet transform. Rather than often used wavelet (soft-)thresholding techniques, we employ the group structure in the wavelet domain to arrive at left-invariant evolutions and flows (diffusion), for contextual crossing preserving enhancement of multiple scale elongated structures in noisy images. We present experiments that display benefits of our work compared to recent PDE techniques acting directly on the images and to our previous work on left-invariant diffusions on orientation scores defined on Euclidean motion group.Comment: 40 page

Phase-Stretch Adaptive Gradient-Field Extractor (PAGE)

Emulated by an algorithm, certain physical phenomena have useful properties for image transformation. For example, image denoising can be achieved by propagating the image through the heat diffusion equation. Different stages of the temporal evolution represent a multiscale embedding of the image. Stimulated by the photonic time stretch, a realtime data acquisition technology, the Phase Stretch Transform (PST) emulates 2D propagation through a medium with group velocity dispersion, followed by coherent (phase) detection. The algorithm performs exceptionally well as an edge and texture extractor, in particular in visually impaired images. Here, we introduce a decomposition method that is metaphorically analogous to birefringent diffractive propagation. This decomposition method, which we term as Phase-stretch Adaptive Gradient-field Extractor (PAGE) embeds the original image into a set of feature maps that selects semantic information at different scale, orientation, and spatial frequency. We demonstrate applications of this algorithm in edge detection and extraction of semantic information from medical images, electron microscopy images of semiconductor circuits, optical characters and finger print images. The code for this algorithm is available here (https://github.com/JalaliLabUCLA)

Optic disc detection by earth mover's distance template matching

This paper presents a method for the detection of OD in the retina which takes advantage of the powerful preprocessing techniques such as the contrast enhancement, Gabor wavelet transform for vessel segmentation, mathematical morphology and Earth Mover’s distance (EMD) as the matching process. The OD detection algorithm is based on matching the expected directional pattern of the retinal blood vessels. Vessel segmentation method produces segmentations by classifying each image pixel as vessel or nonvessel, based on the pixel’s feature vector. Feature vectors are composed of the pixel’s intensity and 2D Gabor wavelet transform responses taken at multiple scales. A simple matched filter is proposed to roughly match the direction of the vessels at the OD vicinity using the EMD. The minimum distance provides an estimate of the OD center coordinates. The method’s performance is evaluated on publicly available DRIVE and STARE databases. On the DRIVE database the OD center was detected correctly in all of the 40 images (100%) and on the STARE database the OD was detected correctly in 76 out of the 81 images, even in rather difficult pathological situations

Curvelet Transform based Retinal Image Analysis

Edge detection is an important assignment in image processing, as it is used as a primary tool for pattern  recognition, image segmentation and scene analysis.  An edge detector is a high-pass filter that can be applied for extracting the edge points within an image. Edge detection in the spatial domain is  accomplished through convolution with a set of directional derivative masks in this domain. On the other hand, working in the  frequency domain has many advantages, starting from introducing an alternative description to the  spatial representation and providing more efficient and faster computational schemes with less sensitivity  to noise through high filtering, de-noising and compression algorithms. Fourier transforms, wavelet and  curvelet transform are among the most widely used frequency-domain edge detection from satellite  images. However, the Fourier transform is global and poorly adapted to local singularities. Some of  these draw backs are solved by the wavelet transforms especially for singularities detection and  computation. In this paper, the relatively new multi-resolution technique, curvelet transform, is assessed  and introduced to overcome the wavelet transform limitation in directionality and scaling.  In this research paper, the assessment of second generation curvelet transforms as an edge detection tool  will be introduced and compared with first generation cuevelet transform.DOI:http://dx.doi.org/10.11591/ijece.v3i3.245