The utility of very-high resolution unmanned aerial vehicles (UAV) imagery in monitoring the spatial and temporal variations in leaf moisture content of smallholder maize farming systems.

Masters Degree. University of KwaZulu-Natal, Pietermaritzburg.Maize moisture stress, resulting from rainfall variability, is a primary challenge in the production of rain-fed maize farming, especially in water-scarce regions such as southern Africa. Quantifying maize moisture variations throughout the growing season can support agricultural decision-making and prompt the rapid and robust detection of smallholder maize moisture stress. Unmanned Aerial Vehicles (UAVs), equipped with light-weight multispectral sensors, provide spatially explicit near real-time information for determining maize moisture content at farm scale. Therefore, this study evaluated the utility of UAV derived multispectral imagery in estimating maize leaf moisture content indicators on smallholder farming systems throughout the maize growing season. The first objective of the study was to conduct a comparative analysis in order to evaluate the performance of five regression techniques (support vector regression, random forest regression, decision trees regression, artificial neural network regression and the partial least squares regression) in predicting maize water content indicators (i.e. equivalent water thickness (EWT), fuel moisture content (FMC) and specific leaf area (SLA)), and determine the most suitable indicator of smallholder maize water content variability based on multispectral UAV data. The results illustrated that both NIR and red-edge derived spectral variables were critical in characterising maize moisture indicators on smallholder farms. Furthermore, the best models for estimating EWT, FMC and SLA were derived from the random forest regression algorithm with a relative root mean square error (rRMSE) of 3.13%, 1% and 3.48 %, respectively. Additionally, EWT and FMC yielded the highest predictive performance of maize leaf moisture and demonstrated the best correlation with remotely sensed data. The study’s second objective was to evaluate the utility of UAVderived multispectral imagery in estimating the temporal variability of smallholder maize moisture content across the maize growing season using the optimal maize moisture indicators. The findings illustrated that the NIR and red-edge wavelengths were influential in characterising maize moisture variability with the best models for estimating maize EWT and FMC resulting in a rRMSE of 2.27 % and 1%, respectively. Furthermore, the early reproductive stage was the most optimal for accurately estimating maize EWT and FMC using UAVproximal remote sensing. The findings of this study demonstrate the prospects of UAV- derived multispectral data for deriving insightful information on maize moisture availability and overall health conditions. This study serves as fundamental step towards the creation of an early maize moisture stress detection and warning systems, and contributes towards climate change adaptation and resilience of smallholder maize farming

Remote Sensing in Mangroves

The book highlights recent advancements in the mapping and monitoring of mangrove forests using earth observation satellite data. New and historical satellite data and aerial photographs have been used to map the extent, change and bio-physical parameters, such as phenology and biomass. Research was conducted in different parts of the world. Knowledge and understanding gained from this book can be used for the sustainable management of mangrove forests of the worl

The data concept behind the data: From metadata models and labelling schemes towards a generic spectral library

Spectral libraries play a major role in imaging spectroscopy. They are commonly used to store end-member and spectrally pure material spectra, which are primarily used for mapping or unmixing purposes. However, the development of spectral libraries is time consuming and usually sensor and site dependent. Spectral libraries are therefore often developed, used and tailored only for a specific case study and only for one sensor. Multi-sensor and multi-site use of spectral libraries is difficult and requires technical effort for adaptation, transformation, and data harmonization steps. Especially the huge amount of urban material specifications and its spectral variations hamper the setup of a complete spectral library consisting of all available urban material spectra. By a combined use of different urban spectral libraries, besides the improvement of spectral inter- and intra-class variability, missing material spectra could be considered with respect to a multi-sensor/ -site use. Publicly available spectral libraries mostly lack the metadata information that is essential for describing spectra acquisition and sampling background, and can serve to some extent as a measure of quality and reliability of the spectra and the entire library itself. In the GenLib project, a concept for a generic, multi-site and multi-sensor usable spectral library for image spectra on the urban focus was developed. This presentation will introduce a 1) unified, easy-to-understand hierarchical labeling scheme combined with 2) a comprehensive metadata concept that is 3) implemented in the SPECCHIO spectral information system to promote the setup and usability of a generic urban spectral library (GUSL). The labelling scheme was developed to ensure the translation of individual spectral libraries with their own labelling schemes and their usually varying level of details into the GUSL framework. It is based on a modified version of the EAGLE classification concept by combining land use, land cover, land characteristics and spectral characteristics. The metadata concept consists of 59 mandatory and optional attributes that are intended to specify the spatial context, spectral library information, references, accessibility, calibration, preprocessing steps, and spectra specific information describing library spectra implemented in the GUSL. It was developed on the basis of existing metadata concepts and was subject of an expert survey. The metadata concept and the labelling scheme are implemented in the spectral information system SPECCHIO, which is used for sharing and holding GUSL spectra. It allows easy implementation of spectra as well as their specification with the proposed metadata information to extend the GUSL. Therefore, the proposed data model represents a first fundamental step towards a generic usable and continuously expandable spectral library for urban areas. The metadata concept and the labelling scheme also build the basis for the necessary adaptation and transformation steps of the GUSL in order to use it entirely or in excerpts for further multi-site and multi-sensor applications

Review of Invasive Plant Functional Traits and Management Using Remote Sensing in Sub-Saharan Africa

Biodiversity and sustainable development in Sub-Saharan Africa (SSA) are considerably impacted by invasive alien plants (IAPs). Increasing plant invasions in SSA threaten agricultural productivity, biodiversity conservation, and other socioeconomic activities, which in turn put the United Nations Sustainable Development Goals (SDGs) in peril. In order to effectively combat IAPs, understanding their functional traits (morphological, physiological, and phenological traits) and integrating them into remote sensing (RS) is vital. While functional traits influence IAPs’ fitness to invade and establish in a new geographical range, RS aids in studying them remotely, delineating and mapping them, and predicting their potential invasions. The information on this study topic was gathered by reviewing various existing studies published between 2000 and 2024. Based on this review, it was deduced that the majority of IAPs are fast-growing (or acquisitive), with a shorter leaf lifespan, bigger leaves, and higher plant height, ultimately resulting in a higher resource acquisition ability. We established further that in SSA, there are limited studies on IAP functional traits and their integration in RS. Many studies conducted in the region focus mostly on IAP distribution. Evidence from prior studies revealed that functional trait remote sensing (FTRS)-based research not only improves detection and mapping but also predicts whether a certain alien plant can become invasive or expand its distribution range. Thus, using the FTRS approach could help IAP management in SSA, ultimately achieving the SDGs. Our review discusses IAP implications in SSA (e.g., Angola, Tanzania, Benin, Kenya, Uganda, Rwanda, Zambia, Burundi, Zimbabwe, Botswana, Malawi, etc.) and for the achievement of SDGs; functional traits and their impact on alien invasions; and the importance of incorporating functional traits into RS

Microwave Indices from Active and Passive Sensors for Remote Sensing Applications

Past research has comprehensively assessed the capabilities of satellite sensors operating at microwave frequencies, both active (SAR, scatterometers) and passive (radiometers), for the remote sensing of Earth’s surface. Besides brightness temperature and backscattering coefficient, microwave indices, defined as a combination of data collected at different frequencies and polarizations, revealed a good sensitivity to hydrological cycle parameters such as surface soil moisture, vegetation water content, and snow depth and its water equivalent. The differences between microwave backscattering and emission at more frequencies and polarizations have been well established in relation to these parameters, enabling operational retrieval algorithms based on microwave indices to be developed. This Special Issue aims at providing an overview of microwave signal capabilities in estimating the main land parameters of the hydrological cycle, e.g., soil moisture, vegetation water content, and snow water equivalent, on both local and global scales, with a particular focus on the applications of microwave indices

Soil moisture estimation of eucalyptus forests in Portugal with l-band SAR using polarimetric - Decompositions and machine learning

Dissertation submitted in partial fulfilment of the requirements for the Degree of Master of Science in Geospatial TechnologiesSoil moisture is a critical ecological parameter because it is a primary input for all processes that involve the complex interaction between land surface and the atmosphere. Remote sensing, especially using microwaves, has shown great promise in measuring soil moisturewith several operating satellites focused on its continuous estimation and monitoring on a global scale. Portugal is predominantly characterized by Mediterranean and semi-arid climates that feature low and sporadic precipitation. Over 10% of Portugal’s land area has been planted with Eucalyptus globulus- a non-native, fast-growing tree primarily planted for industrial use. Some studies have demonstrated that eucalyptus plantations adversely affect water availability, but overall results have been inconclusive as there are numerous other confounding variables. The goals of this study were to determine, using fully polarimetric L-band SAR and machine learning, if soil moisture could be accurately predicted in eucalyptus forests, and if there is a significant difference in soil moisture inside eucalyptus forests relative to other forests. Vegetated surfaces complicate the estimation of soil moisture because their structure and water content contribute significantly to backscatter of the radar signal. Thus, four polarimetric decompositions were compared to separate vegetative versus surface backscatter. The inputs from those decompositions, as well as several additional radar indices and polarizations from the microwave images, were used as feature inputs into two different machine learning models. After a feature selection process, the soil moisture estimations were retrieved and compared using cross-validation. The best overall soil moisture retrieval for Eucalyptus forests came from Random Forest with a RMSE of 0.021, a MAE of 0.017, and a MBE of 0.001. Through a statistical t-test, predicted soil moisture values in eucalyptus forests did not differ significantly as compared to other forest types in the study area

The EnMAP Managed Vegetation Scientific Processor

Nach jahrelanger wissenschaftlicher und technischer Vorbereitungszeit wird voraussichtlich Ende des Jahres 2020 der Start der orbitalen Phase einer unbemannten deutschen Weltraum-Mission initiiert. Das Environmental Mapping and Analysis Program (EnMAP) wird an Bord des gleichnamigen Satelliten einen hyperspektralen Sensor zur Erfassung terrestrischer Oberflächen tragen. In den Umweltdisziplinen zur Erforschung von Ökosystemen, landwirtschaftlicher, forstwirtschaftlicher und urbaner Flächen, im Bereich der Küsten- und Inlandsgewässer sowie der Geologie und Bodenkunde bereitete man sich im Vorfeld des Starts auf die kommenden Daten vor. Zwar existiert bereits eine Vielzahl an Algorithmen zur wissenschaftlichen Analyse von spektralen Daten, allerdings ergeben sich auch neue Herausforderungen, da die EnMAP-Mission bislang im weltweiten Kontext der Fernerkundung einzigartig ist. Die Abdeckung des vollen optischen Spektrums (420 nm – 2450 nm) in Verbindung mit einer moderaten räumlichen Auflösung von 30 m und einem hohen Signal-Rausch-Verhältnis von mindestens 180 im kurzwelligen Infrarot und über 400 im sichtbaren Spektrum, ermöglichen eine Aufnahmequalität, die bislang nur von flugzeuggestützten Systemen erreicht werden konnte. Die Bemühungen in dieser Dissertation umfassen Aktivitäten in der wissenschaftlichen Vorbereitungsphase zu agrargeographischen Fragestellungen. Algorithmen und Tools zur Analyse der hyperspektralen Daten werden kostenlos im QGIS-Plugin EnMAP-Box 3 zur Verfügung gestellt. Die drängenden Fragen im Agrarsektor drehen sich hierbei um die Ableitung biochemischer und biophysikalischer Parameter aus Fernerkundungsdaten, weshalb die übergeordnete Problemstellung des Promotionsvorhabens die Entwicklung eines wissenschaftsbasierten EnMAP-Tools für bewirtschaftete Vegetationsflächen (EnMAP Managed Vegetation Scientific Processor) darstellt. Zu Beginn wurde eine umfassende Feldkampagne geplant, welche ab April 2014 umgesetzt wurde. Neben der spektralen Erfassung von Blatt-, Bestands- und Bodensignaturen in einem Winterweizen- und einem Maisfeld erfolgte auch die Messung wesentlicher Pflanzenparameter an den exakt gleichen Positionen. Hierzu zählt die non-destruktive Ableitung des Blattflächenindex (LAI), des Blattchlorophyllgehalts (Ccab), des Blattwassergehalts (EWT oder Cw), des relativen Blatttrockengewichts (LMA oder Cm), des mittleren Blattneigungswinkels im Bestand (ALIA) sowie weiterer sekundärer Parameter wie Wuchshöhe, das phänologisches Stadium und der Sonnenvektor. Um die Fähigkeit des späteren EnMAP-Satelliten sich um bis zu 30° orthogonal zur Flugrichtung zu kippen nachzustellen, wurden die spektralen Aufnahmen aus verschiedenen Betrachtungswinkeln erstellt, die dieser Aufnahme-Geometrien nachempfunden sind. Ein gängiges Verfahren zur Ableitung der relevanten Pflanzenparameter ist die Verwendung des Strahlungstransfermodells PROSAIL, welches das spektrale Signal einer Vegetationsfläche auf Basis der zugrundeliegenden biophysikalischen und biochemischen Parameter simuliert. Bei der Umkehr dieses Prozesses können ebendiese Variablen von gemessenen spektralen Daten abgeleitet werden. Hierzu wurde eine Datenbank (Look-Up-Table, LUT) aus PROSAIL-Modellläufen aufgebaut und die in den Feldkampagnen gemessenen Spektren mit dieser abgeglichen. Mit dieser Methode der LUT-Invertierung aus unterschiedlichen Aufnahmewinkeln konnten Genauigkeiten bei der LAI-Schätzung von 18 % und bei Blattchlorophyll von 20 % erzielt werden. Eine starke Anisotropie, also eine Reflexionsabhängigkeit von der Beleuchtungs- und Aufnahmerichtung, wurde bei Winterweizen vor allem für frühe Entwicklungsstadien festgestellt. Bei einer anschließenden Studie zur Unsicherheitsanalyse des Spektralmodells wurden PROSAIL-Ergebnisse, bei denen real gemessene Pflanzenparameter als Input dienten, den zugehörigen Reflektanzspektren gegenübergestellt. Es zeigten sich hierbei mitunter starke Abweichungen zwischen gemessenen und modellierten Spektren, die im Falle des Winterweizens einen saisonalen Verlauf zeichneten. Vor allem während frühen Wachstumsstadien tendierte das Modell dazu die Reflektanz im nahen Infrarot zu überschätzen, während es gegen Ende der Wachstumsperiode eher eine Unterschätzung aufwies. Als Unsicherheitsfaktor wurde die Parametrisierung des Modells ausgemacht, wenn der ALIA-Parameter als echter physikalische Blattwinkel interpretiert wird. Es wurde geschlussfolgert, dass eine Separierung von LAI und ALIA bei der Invertierung von PROSAIL eine korrekte Abschätzung der weniger sensitiven Parameter behindert. Die Erstellung des Vegetations-Prozessors erforderte die Verwendung von Regressions-Algorithmen des maschinellen Lernens (MLRA), da eine Verteilung von großen LUTs an die User nicht praktikabel wäre. Die MLRAs wurden an synthetischen Datensätzen trainiert, wobei zunächst die Optimierung der Hyperparameter im Vordergrund stand, bevor die Anwendung an echten Spektraldaten unternommen wurde. Es konnten dabei erst aussagekräftige Ergebnisse produziert werden, als die Trainingsdaten mit einem künstlichen Rauschen belegt wurden, da die Algorithmen unter einer Überanpassung an die Modellumgebung litten. Mithilfe des Prozessors konnten schließlich LAI, ALIA, Ccab und Cw aus hyperspektralen Daten abgeleitet werden. Künstliche neuronale Netze dienen dabei als Blackbox-Modelle, die in kurzer Zeit große Datenmengen verarbeiten können und somit einen entscheidenden Beitrag zur modernen angewandten Fernerkundung für eine breite User-Community leisten.After years of scientific and technical preparation, the launch of an unmanned German space-mission is planned to be initiated in 2020. The Environmental Mapping and Analysis Program (EnMAP) is going to provide an equally named hyperspectral imager to map land surfaces. Scientists of environmental disciplines of monitoring of ecosystems, agricultural, forestry and urban areas as well as coastal and inland waters, geology and soils prepared themselves for the upcoming data prior to the actual launch. Although there already exists a variety of useful algorithms for a profound analysis of spectral data, new challenges will arise given the uniqueness of the EnMAP-mission in the global context of remote sensing; i.e. coverage of the full range of the optical spectrum (420 nm – 2450 nm) in combination with a moderate spatial resolution of 30 m and a high signal-to-noise ratio of at least 180 in the shortwave infrared and above 400 in the visible spectrum. This enables an imaging quality which to this date has only been reached by airborne systems. The efforts of this dissertation comprise activities in the scientific preparation phase for agro-geographical tasks. Algorithms and tools for an analysis of hyperspectral data are being provided for free in the QGIS-plugin EnMAP-Box 3. Urgent questions in the agricultural sector revolve around the derivation of biochemical and biophysical parameters from remote sensing data. For this reason, the overarching objective of this promotion is the development of a scientific EnMAP-tool for managed areas of vegetation (EnMAP Managed Vegetation Scientific Processor). At first, an extensive field campaign was planned and then started in April, 2014. Apart from spectral observations of leaves, canopies and soils in a winter wheat and a maize field, also relevant plant parameters were acquired at the exact same spots. Namely, they are the Leaf Area Index (LAI), leaf chlorophyll content (Ccab), leaf water content (EWT or Cw), relative dry leaf weight (LMA or Cm), Average Leaf Inclination Angle (ALIA) as well as other secondary parameters like canopy height, phenological stage and the solar vector. Spectral measurements were captured from different observation angles to match ground data with the sensing geometry of the future EnMAP-satellite, which can be tilted up to 30° orthogonal to its direction of flight. A common procedure to derive relevant crop parameters is to make use of the radiative transfer model PROSAIL, which simulates the spectral signal of a vegetated surface based on biophysical and biochemical input parameters. If this process is reverted, said parameters can be derived from measured spectral data. To do so, a Look-Up-Table (LUT) is built containing model runs of PROSAIL and then subsequently compared against spectra from the field campaigns. With this approach of LUT-inversions from different observation angles, an accuracy of 18 % could be achieved for LAI and 20 % for Ccab. Strong anisotropic effects, i.e. dependence on illumination geometry and sensor orientation, were identified for winter wheat mainly in the early stages of plant development. In a consecutive study about uncertainties of the spectral model, PROSAIL results fed with in situ measured crop parameters as input, were opposed to their associated reflectance signatures. A strong deviation between measured and modelled spectra was observed, which – in the case of winter wheat – showed a seasonal behavior. The model tended to overestimate reflectances in the near infrared for early phenological stages and to underestimate them at end of the growing period. The parametrization of the model was identified as an uncertainty factor if the ALIA parameter is interpreted as true physical leaf inclinations. It was concluded that a separation of LAI and ALIA at inversion of PROSAIL prevents an adequate estimation of the less sensitive parameters. The development of the vegetation processor required the use of Machine Learning Regression Algorithms (MLRA), since distribution of large LUTs to the user would be impracticable. The MLRAs were trained with synthetic datasets with primary importance to optimize their hyperparameters, before attempting to apply the algorithms to real spectral data. Significant results could not be obtained until training data were altered with artificial noise, because algorithms suffered from overfitting to the model environment. Executing the processor allowed to derive LAI, ALIA, Ccab and Cw from hyperspectral data. Artificial neural networks served as black box models, which digest great amount of data in a short period of time and thus make a decisive contribution to modern applied remote sensing with relevance for a broad user-community