Upper and lower bounds for finding connected motifs in vertex-colored graphs

International audienceWe study the problem of finding occurrences of motifs in vertex-colored graphs, where a motif is a multiset of colors, and an occurrence of a motif is a subset of connected vertices whose multiset of colors equals the motif. This problem is a natural graph-theoretic pattern matching variant where we are not interested in the actual structure of the occurrence of the pattern, we only require it to preserve the very basic topological requirement of connectedness. We give two positive results and three negative results that together give an extensive picture of tractable and intractable instances of the problem

Using Neighborhood Diversity to Solve Hard Problems

Parameterized algorithms are a very useful tool for dealing with NP-hard problems on graphs. Yet, to properly utilize parameterized algorithms it is necessary to choose the right parameter based on the type of problem and properties of the target graph class. Tree-width is an example of a very successful graph parameter, however it cannot be used on dense graph classes and there also exist problems which are hard even on graphs of bounded tree-width. Such problems can be tackled by using vertex cover as a parameter, however this places severe restrictions on admissible graph classes. Michael Lampis has recently introduced neighborhood diversity, a new graph parameter which generalizes vertex cover to dense graphs. Among other results, he has shown that simple parameterized algorithms exist for a few problems on graphs of bounded neighborhood diversity. Our article further studies this area and provides new algorithms parameterized by neighborhood diversity for the p-Vertex-Disjoint Paths, Graph Motif and Precoloring Extension problems -- the latter two being hard even on graphs of bounded tree-width

Tropical Dominating Sets in Vertex-Coloured Graphs

Given a vertex-coloured graph, a dominating set is said to be tropical if every colour of the graph appears at least once in the set. Here, we study minimum tropical dominating sets from structural and algorithmic points of view. First, we prove that the tropical dominating set problem is NP-complete even when restricted to a simple path. Then, we establish upper bounds related to various parameters of the graph such as minimum degree and number of edges. We also give upper bounds for random graphs. Last, we give approximability and inapproximability results for general and restricted classes of graphs, and establish a FPT algorithm for interval graphs.Comment: 19 pages, 4 figure

The parameterised complexity of counting connected subgraphs and graph motifs

We introduce a family of parameterised counting problems on graphs, p-#Induced Subgraph With Property(Φ), which generalises a number of problems which have previously been studied. This paper focuses on the case in which Φ defines a family of graphs whose edge-minimal elements all have bounded treewidth; this includes the special case in which Φ describes the property of being connected. We show that exactly counting the number of connected induced k-vertex subgraphs in an n-vertex graph is #W[1]-hard, but on the other hand there exists an FPTRAS for the problem; more generally, we show that there exists an FPTRAS for p-#Induced Subgraph With Property(Φ) whenever Φ is monotone and all the minimal graphs satisfying Φ have bounded treewidth. We then apply these results to a counting version of the Graph Motif problem

Balanced Connected Subgraph Problem in Geometric Intersection Graphs

We study the Balanced Connected Subgraph(shortly, BCS) problem on geometric intersection graphs such as interval, circular-arc, permutation, unit-disk, outer-string graphs, etc. Given a vertex-colored graph $G=(V,E)$, where each vertex in $V$ is colored with either ``red'' or ``blue'', the BCS problem seeks a maximum cardinality induced connected subgraph $H$ of $G$ such that $H$ is color-balanced, i.e., $H$ contains an equal number of red and blue vertices. We study the computational complexity landscape of the BCS problem while considering geometric intersection graphs. On one hand, we prove that the BCS problem is NP-hard on the unit disk, outer-string, complete grid, and unit square graphs. On the other hand, we design polynomial-time algorithms for the BCS problem on interval, circular-arc and permutation graphs. In particular, we give algorithm for the Steiner Tree problem on both the interval graphs and circular arc graphs, that is used as a subroutine for solving BCS problem on same graph classes. Finally, we present a FPT algorithm for the BCS problem on general graphs.Comment: 17 pages, 3 figure