Re-pair for Trees

We introduce a new linear time compression algorithm, called 'Repair for Trees', which compresses ordered trees over a ranked alphabet using linear straight-line context-free tree grammars. Such grammars generalize straight-line context-free string grammars and allow basic tree operations, like traversal along edges, to be executed without prior decompression. Our algorithm can be considered as a generalization of the 'Re-pair' algorithm developed by N. Jesper Larsson and Alistair Moffat in 2000. The latter algorithm is a dictionary-based compression algorithm for strings. We also introduce a succinct coding which is specialized in further compressing the grammars generated by our algorithm. Thisis accomplished without loosing the ability do directly execute queries on this compressed representation of the input tree. Finally, we compare the grammars and output files generated by a prototype of the Re-pair for Trees algorithm with those of similar compression algorithms. The obtained results show that that our algorithm outperforms its competitors in terms of compression ratio, runtime and memory usage

XML Compression via DAGs

Unranked trees can be represented using their minimal dag (directed acyclic graph). For XML this achieves high compression ratios due to their repetitive mark up. Unranked trees are often represented through first child/next sibling (fcns) encoded binary trees. We study the difference in size (= number of edges) of minimal dag versus minimal dag of the fcns encoded binary tree. One main finding is that the size of the dag of the binary tree can never be smaller than the square root of the size of the minimal dag, and that there are examples that match this bound. We introduce a new combined structure, the hybrid dag, which is guaranteed to be smaller than (or equal in size to) both dags. Interestingly, we find through experiments that last child/previous sibling encodings are much better for XML compression via dags, than fcns encodings. We determine the average sizes of unranked and binary dags over a given set of labels (under uniform distribution) in terms of their exact generating functions, and in terms of their asymptotical behavior.Comment: A short version of this paper appeared in the Proceedings of ICDT 201

Finger Search in Grammar-Compressed Strings

Grammar-based compression, where one replaces a long string by a small context-free grammar that generates the string, is a simple and powerful paradigm that captures many popular compression schemes. Given a grammar, the random access problem is to compactly represent the grammar while supporting random access, that is, given a position in the original uncompressed string report the character at that position. In this paper we study the random access problem with the finger search property, that is, the time for a random access query should depend on the distance between a specified index $f$, called the \emph{finger}, and the query index $i$. We consider both a static variant, where we first place a finger and subsequently access indices near the finger efficiently, and a dynamic variant where also moving the finger such that the time depends on the distance moved is supported. Let $n$ be the size the grammar, and let $N$ be the size of the string. For the static variant we give a linear space representation that supports placing the finger in $O(\log N)$ time and subsequently accessing in $O(\log D)$ time, where $D$ is the distance between the finger and the accessed index. For the dynamic variant we give a linear space representation that supports placing the finger in $O(\log N)$ time and accessing and moving the finger in $O(\log D + \log \log N)$ time. Compared to the best linear space solution to random access, we improve a $O(\log N)$ query bound to $O(\log D)$ for the static variant and to $O(\log D + \log \log N)$ for the dynamic variant, while maintaining linear space. As an application of our results we obtain an improved solution to the longest common extension problem in grammar compressed strings. To obtain our results, we introduce several new techniques of independent interest, including a novel van Emde Boas style decomposition of grammars

Linear Compressed Pattern Matching for Polynomial Rewriting (Extended Abstract)

This paper is an extended abstract of an analysis of term rewriting where the terms in the rewrite rules as well as the term to be rewritten are compressed by a singleton tree grammar (STG). This form of compression is more general than node sharing or representing terms as dags since also partial trees (contexts) can be shared in the compression. In the first part efficient but complex algorithms for detecting applicability of a rewrite rule under STG-compression are constructed and analyzed. The second part applies these results to term rewriting sequences. The main result for submatching is that finding a redex of a left-linear rule can be performed in polynomial time under STG-compression. The main implications for rewriting and (single-position or parallel) rewriting steps are: (i) under STG-compression, n rewriting steps can be performed in nondeterministic polynomial time. (ii) under STG-compression and for left-linear rewrite rules a sequence of n rewriting steps can be performed in polynomial time, and (iii) for compressed rewrite rules where the left hand sides are either DAG-compressed or ground and STG-compressed, and an STG-compressed target term, n rewriting steps can be performed in polynomial time.Comment: In Proceedings TERMGRAPH 2013, arXiv:1302.599