86,700 research outputs found
Dynamic fluctuations coincide with periods of high and low modularity in resting-state functional brain networks
We investigate the relationship of resting-state fMRI functional connectivity
estimated over long periods of time with time-varying functional connectivity
estimated over shorter time intervals. We show that using Pearson's correlation
to estimate functional connectivity implies that the range of fluctuations of
functional connections over short time scales is subject to statistical
constraints imposed by their connectivity strength over longer scales. We
present a method for estimating time-varying functional connectivity that is
designed to mitigate this issue and allows us to identify episodes where
functional connections are unexpectedly strong or weak. We apply this method to
data recorded from participants, and show that the number of
unexpectedly strong/weak connections fluctuates over time, and that these
variations coincide with intermittent periods of high and low modularity in
time-varying functional connectivity. We also find that during periods of
relative quiescence regions associated with default mode network tend to join
communities with attentional, control, and primary sensory systems. In
contrast, during periods where many connections are unexpectedly strong/weak,
default mode regions dissociate and form distinct modules. Finally, we go on to
show that, while all functional connections can at times manifest stronger
(more positively correlated) or weaker (more negatively correlated) than
expected, a small number of connections, mostly within the visual and
somatomotor networks, do so a disproportional number of times. Our statistical
approach allows the detection of functional connections that fluctuate more or
less than expected based on their long-time averages and may be of use in
future studies characterizing the spatio-temporal patterns of time-varying
functional connectivityComment: 47 Pages, 8 Figures, 4 Supplementary Figure
Disambiguating the role of blood flow and global signal with partial information decomposition
Global signal (GS) is an ubiquitous construct in resting state functional magnetic resonance imaging (rs-fMRI), associated to nuisance, but containing by definition most of the neuronal signal. Global signal regression (GSR) effectively removes the impact of physiological noise and other artifacts, but at the same time it alters correlational patterns in unpredicted ways. Performing GSR taking into account the underlying physiology (mainly the blood arrival time) has been proven to be beneficial. From these observations we aimed to: 1) characterize the effect of GSR on network-level functional connectivity in a large dataset; 2) assess the complementary role of global signal and vessels; and 3) use the framework of partial information decomposition to further look into the joint dynamics of the global signal and vessels, and their respective influence on the dynamics of cortical areas. We observe that GSR affects intrinsic connectivity networks in the connectome in a non-uniform way. Furthermore, by estimating the predictive information of blood flow and the global signal using partial information decomposition, we observe that both signals are present in different amounts across intrinsic connectivity networks. Simulations showed that differences in blood arrival time can largely explain this phenomenon, while using hemodynamic and calcium mouse recordings we were able to confirm the presence of vascular effects, as calcium recordings lack hemodynamic information. With these results we confirm network-specific effects of GSR and the importance of taking blood flow into account for improving de-noising methods. Additionally, and beyond the mere issue of data denoising, we quantify the diverse and complementary effect of global and vessel BOLD signals on the dynamics of cortical areas
Disentangling causal webs in the brain using functional Magnetic Resonance Imaging: A review of current approaches
In the past two decades, functional Magnetic Resonance Imaging has been used
to relate neuronal network activity to cognitive processing and behaviour.
Recently this approach has been augmented by algorithms that allow us to infer
causal links between component populations of neuronal networks. Multiple
inference procedures have been proposed to approach this research question but
so far, each method has limitations when it comes to establishing whole-brain
connectivity patterns. In this work, we discuss eight ways to infer causality
in fMRI research: Bayesian Nets, Dynamical Causal Modelling, Granger Causality,
Likelihood Ratios, LiNGAM, Patel's Tau, Structural Equation Modelling, and
Transfer Entropy. We finish with formulating some recommendations for the
future directions in this area
Lagged and instantaneous dynamical influences related to brain structural connectivity
Contemporary neuroimaging methods can shed light on the basis of human neural
and cognitive specializations, with important implications for neuroscience and
medicine. Different MRI acquisitions provide different brain networks at the
macroscale; whilst diffusion-weighted MRI (dMRI) provides a structural
connectivity (SC) coincident with the bundles of parallel fibers between brain
areas, functional MRI (fMRI) accounts for the variations in the
blood-oxygenation-level-dependent T2* signal, providing functional connectivity
(FC).Understanding the precise relation between FC and SC, that is, between
brain dynamics and structure, is still a challenge for neuroscience. To
investigate this problem, we acquired data at rest and built the corresponding
SC (with matrix elements corresponding to the fiber number between brain areas)
to be compared with FC connectivity matrices obtained by 3 different methods:
directed dependencies by an exploratory version of structural equation modeling
(eSEM), linear correlations (C) and partial correlations (PC). We also
considered the possibility of using lagged correlations in time series; so, we
compared a lagged version of eSEM and Granger causality (GC). Our results were
two-fold: firstly, eSEM performance in correlating with SC was comparable to
those obtained from C and PC, but eSEM (not C nor PC) provides information
about directionality of the functional interactions. Second, interactions on a
time scale much smaller than the sampling time, captured by instantaneous
connectivity methods, are much more related to SC than slow directed influences
captured by the lagged analysis. Indeed the performance in correlating with SC
was much worse for GC and for the lagged version of eSEM. We expect these
results to supply further insights to the interplay between SC and functional
patterns, an important issue in the study of brain physiology and function.Comment: Accepted and published in Frontiers in Psychology in its current
form. 27 pages, 1 table, 5 figures, 2 suppl. figure
Neural Substrates of Chronic Pain in the Thalamocortical Circuit
Chronic pain (CP), a pathological condition with a large repertory of signs and symptoms, has no recognizable neural functional common hallmark shared by its diverse expressions. The aim of the present research was to identify potential dynamic markers shared in CP models, by using simultaneous electrophysiological extracellular recordings from the rat ventrobasal thalamus and the primary somatosensory cortex. We have been able to extract a neural signature attributable solely to CP, independent from of the originating conditions. This study showed disrupted functional connectivity and increased redundancy in firing patterns in CP models versus controls, and interpreted these signs as a neural signature of CP. In a clinical perspective, we envisage CP as disconnection syndrome and hypothesize potential novel therapeutic appraisal
- …