19 research outputs found
COMPUTER AIDED SYSTEM FOR BREAST CANCER DIAGNOSIS USING CURVELET TRANSFORM
Breast cancer is a leading cause of death among women worldwide. Early detection is the key for improving breast cancer prognosis. Digital mammography remains one of the most suitable tools for early detection of breast cancer. Hence, there are strong needs for the development of computer aided diagnosis (CAD) systems which have the capability to help radiologists in decision making. The main goal is to increase the diagnostic accuracy rate. In this thesis we developed a computer aided system for the diagnosis and detection of breast cancer using curvelet transform. Curvelet is a multiscale transform which possess directionality and anisotropy, and it breaks some inherent limitations of wavelet in representing edges in images. We started this study by developing a diagnosis system. Five feature extraction methods were developed with curvelet and wavelet coefficients to differentiate between different breast cancer classes. The results with curvelet and wavelet were compared. The experimental results show a high performance of the proposed methods and classification accuracy rate achieved 97.30%.
The thesis then provides an automatic system for breast cancer detection. An automatic thresholding algorithm was used to separate the area composed of the breast and the pectoral muscle from the background of the image. Subsequently, a region growing algorithm was used to locate the pectoral muscle and suppress it from the breast. Then, the work concentrates on the segmentation of region of interest (ROI). Two methods are suggested to accomplish the segmentation stage: an adaptive thresholding method and a pattern matching method. Once the ROI has been identified, an automatic cropping is performed to extract it from the original mammogram. Subsequently, the suggested feature extraction methods were applied to the segmented ROIs. Finally, the K-Nearest Neighbor (KNN) and Support Vector Machine (SVM) classifiers were used to determine whether the region is abnormal or normal. At this level, the study focuses on two abnormality types (mammographic masses and architectural distortion). Experimental results show that the introduced methods have very high detection accuracies. The effectiveness of the proposed methods has been tested with Mammographic Image Analysis Society (MIAS) dataset. Throughout the thesis all proposed methods and algorithms have been applied with both curvelet and wavelet for comparison and statistical tests were also performed. The overall results show that curvelet transform performs better than wavelet and the difference is statistically significant
Information Fusion of Magnetic Resonance Images and Mammographic Scans for Improved Diagnostic Management of Breast Cancer
Medical imaging is critical to non-invasive diagnosis and treatment of a wide spectrum
of medical conditions. However, different modalities of medical imaging employ/apply
di erent contrast mechanisms and, consequently, provide different depictions of bodily
anatomy. As a result, there is a frequent problem where the same pathology can be
detected by one type of medical imaging while being missed by others. This problem brings
forward the importance of the development of image processing tools for integrating the
information provided by different imaging modalities via the process of information fusion.
One particularly important example of clinical application of such tools is in the diagnostic
management of breast cancer, which is a prevailing cause of cancer-related mortality in
women. Currently, the diagnosis of breast cancer relies mainly on X-ray mammography and
Magnetic Resonance Imaging (MRI), which are both important throughout different stages
of detection, localization, and treatment of the disease. The sensitivity of mammography,
however, is known to be limited in the case of relatively dense breasts, while contrast enhanced
MRI tends to yield frequent 'false alarms' due to its high sensitivity. Given this
situation, it is critical to find reliable ways of fusing the mammography and MRI scans in
order to improve the sensitivity of the former while boosting the specificity of the latter.
Unfortunately, fusing the above types of medical images is known to be a difficult computational
problem. Indeed, while MRI scans are usually volumetric (i.e., 3-D), digital
mammograms are always planar (2-D). Moreover, mammograms are invariably acquired
under the force of compression paddles, thus making the breast anatomy undergo sizeable
deformations. In the case of MRI, on the other hand, the breast is rarely constrained and
imaged in a pendulous state. Finally, X-ray mammography and MRI exploit two completely
di erent physical mechanisms, which produce distinct diagnostic contrasts which
are related in a non-trivial way. Under such conditions, the success of information fusion
depends on one's ability to establish spatial correspondences between mammograms
and their related MRI volumes in a cross-modal cross-dimensional (CMCD) setting in the
presence of spatial deformations (+SD). Solving the problem of information fusion in the
CMCD+SD setting is a very challenging analytical/computational problem, still in need
of efficient solutions.
In the literature, there is a lack of a generic and consistent solution to the problem of
fusing mammograms and breast MRIs and using their complementary information. Most
of the existing MRI to mammogram registration techniques are based on a biomechanical
approach which builds a speci c model for each patient to simulate the effect of mammographic
compression. The biomechanical model is not optimal as it ignores the common
characteristics of breast deformation across different cases. Breast deformation is essentially the planarization of a 3-D volume between two paddles, which is common in all
patients. Regardless of the size, shape, or internal con guration of the breast tissue, one
can predict the major part of the deformation only by considering the geometry of the
breast tissue. In contrast with complex standard methods relying on patient-speci c biomechanical
modeling, we developed a new and relatively simple approach to estimate the
deformation and nd the correspondences. We consider the total deformation to consist of
two components: a large-magnitude global deformation due to mammographic compression
and a residual deformation of relatively smaller amplitude. We propose a much simpler
way of predicting the global deformation which compares favorably to FEM in terms of
its accuracy. The residual deformation, on the other hand, is recovered in a variational
framework using an elastic transformation model.
The proposed algorithm provides us with a computational pipeline that takes breast
MRIs and mammograms as inputs and returns the spatial transformation which establishes
the correspondences between them. This spatial transformation can be applied in different
applications, e.g., producing 'MRI-enhanced' mammograms (which is capable of improving
the quality of surgical care) and correlating between different types of mammograms.
We investigate the performance of our proposed pipeline on the application of enhancing
mammograms by means of MRIs and we have shown improvements over the state of the
art
COMPUTER AIDED SYSTEM FOR BREAST CANCER DIAGNOSIS USING CURVELET TRANSFORM
Breast cancer is a leading cause of death among women worldwide. Early detection is the key for improving breast cancer prognosis. Digital mammography remains one of the most suitable tools for early detection of breast cancer. Hence, there are strong needs for the development of computer aided diagnosis (CAD) systems which have the capability to help radiologists in decision making. The main goal is to increase the diagnostic accuracy rate. In this thesis we developed a computer aided system for the diagnosis and detection of breast cancer using curvelet transform. Curvelet is a multiscale transform which possess directionality and anisotropy, and it breaks some inherent limitations of wavelet in representing edges in images. We started this study by developing a diagnosis system. Five feature extraction methods were developed with curvelet and wavelet coefficients to differentiate between different breast cancer classes. The results with curvelet and wavelet were compared. The experimental results show a high performance of the proposed methods and classification accuracy rate achieved 97.30%.
The thesis then provides an automatic system for breast cancer detection. An automatic thresholding algorithm was used to separate the area composed of the breast and the pectoral muscle from the background of the image. Subsequently, a region growing algorithm was used to locate the pectoral muscle and suppress it from the breast. Then, the work concentrates on the segmentation of region of interest (ROI). Two methods are suggested to accomplish the segmentation stage: an adaptive thresholding method and a pattern matching method. Once the ROI has been identified, an automatic cropping is performed to extract it from the original mammogram. Subsequently, the suggested feature extraction methods were applied to the segmented ROIs. Finally, the K-Nearest Neighbor (KNN) and Support Vector Machine (SVM) classifiers were used to determine whether the region is abnormal or normal. At this level, the study focuses on two abnormality types (mammographic masses and architectural distortion). Experimental results show that the introduced methods have very high detection accuracies. The effectiveness of the proposed methods has been tested with Mammographic Image Analysis Society (MIAS) dataset. Throughout the thesis all proposed methods and algorithms have been applied with both curvelet and wavelet for comparison and statistical tests were also performed. The overall results show that curvelet transform performs better than wavelet and the difference is statistically significant
Deep Learning in Medical Image Analysis
The accelerating power of deep learning in diagnosing diseases will empower physicians and speed up decision making in clinical environments. Applications of modern medical instruments and digitalization of medical care have generated enormous amounts of medical images in recent years. In this big data arena, new deep learning methods and computational models for efficient data processing, analysis, and modeling of the generated data are crucially important for clinical applications and understanding the underlying biological process. This book presents and highlights novel algorithms, architectures, techniques, and applications of deep learning for medical image analysis
An Investigation of Global and Local Radiomic Features for Customized Self-Assessment Mammographic Test Sets for Radiologists in China in Comparison with Those in Australia
Self-assessment test sets have demonstrated being effective tools to improve radiologists’ diagnostic skills through immediate error feedback. Current sets use a one-size-fits-all approach in selecting challenging cases, overlooking cohort-specific weaknesses. This thesis assessed feasibility of using a comprehensive set of handcrafted global radiomic features (Stage 1, Chapter 3) as well as handcrafted (Stage 2, Chapter 4) and deep-learning based (Stage 3, Chapter 5) local radiomic features to identify challenging mammographic cases for Chinese and Australian radiologists. In the first stage, global handcrafted radiomic features and Random Forest models analyzed mammography datasets involving 36 radiologists from China and Australia independently assessing 60 dense mammographic cases. The results were used to build and evaluate models’ performance in case difficulty prediction. The second stage focused on local handcrafted radiomic features, utilizing the same dataset but extracting features from error-related local mammographic areas to analyze features linked to diagnostic errors. The final stage introduced deep learning, specifically Convolutional Neural Network (CNN), using an additional test set and radiologists’ readings to identify features linked to false positive errors. Stage 1 found that global radiomic features effectively detected false positive and false negative errors. Notably, Australian radiologists showed less predictable errors than their Chinese counterparts. Feature normalization did not improve model performance. In Stage 2, the model showed varying success rates in predicting false positives and false negatives among the two cohorts, with specific mammographic regions more prone to errors. In Stage 3, the transferred ResNet-50 architecture performed the best for both cohorts. In conclusion, the thesis affirmed the importance of radiomic features in improving curation of cohort-specific self-assessment mammography test sets
Characterising pattern asymmetry in pigmented skin lesions
Abstract. In clinical diagnosis of pigmented skin lesions asymmetric pigmentation is often indicative of
melanoma. This paper describes a method and measures for characterizing lesion symmetry. The estimate of
mirror symmetry is computed first for a number of axes at different degrees of rotation with respect to the
lesion centre. The statistics of these estimates are the used to assess the overall symmetry. The method is
applied to three different lesion representations showing the overall pigmentation, the pigmentation pattern,
and the pattern of dermal melanin. The best measure is a 100% sensitive and 96% specific indicator of
melanoma on a test set of 33 lesions, with a separate training set consisting of 66 lesions