The Parallel Distributed Image Search Engine (ParaDISE)

Image retrieval is a complex task that differs according to the context and the user requirements in any specific field, for example in a medical environment. Search by text is often not possible or optimal and retrieval by the visual content does not always succeed in modelling high-level concepts that a user is looking for. Modern image retrieval techniques consists of multiple steps and aim to retrieve information from large–scale datasets and not only based on global image appearance but local features and if possible in a connection between visual features and text or semantics. This paper presents the Parallel Distributed Image Search Engine (ParaDISE), an image retrieval system that combines visual search with text–based retrieval and that is available as open source and free of charge. The main design concepts of ParaDISE are flexibility, expandability, scalability and interoperability. These concepts constitute the system, able to be used both in real–world applications and as an image retrieval research platform. Apart from the architecture and the implementation of the system, two use cases are described, an application of ParaDISE in retrieval of images from the medical literature and a visual feature evaluation for medical image retrieval. Future steps include the creation of an open source community that will contribute and expand this platform based on the existing parts

Shangri-La: a medical case-based retrieval tool

Large amounts of medical visual data are produced in hospitals daily and made available continuously via publications in the scientific literature, representing the medical knowledge. However, it is not always easy to find the desired information and in clinical routine the time to fulfil an information need is often very limited. Information retrieval systems are a useful tool to provide access to these documents/images in the biomedical literature related to information needs of medical professionals. Shangri–La is a medical retrieval system that can potentially help clinicians to make decisions on difficult cases. It retrieves articles from the biomedical literature when querying a case description and attached images. The system is based on a multimodal retrieval approach with a focus on the integration of visual information connected to text. The approach includes a query–adaptive multimodal fusion criterion that analyses if visual features are suitable to be fused with text for the retrieval. Furthermore, image modality information is integrated in the retrieval step. The approach is evaluated using the ImageCLEFmed 2013 medical retrieval benchmark and can thus be compared to other approaches. Results show that the final approach outperforms the best multimodal approach submitted to ImageCLEFmed 2013

Semi–Supervised Learning for Image Modality Classification

Searching for medical image content is a regular task for many physicians, especially in radiology. Retrieval of medical images from the scientific literature can benefit from automatic modality classification to focus the search and filter out non–relevant items. Training datasets are often unevenly distributed regarding the classes resulting sometimes in a less than optimal classification performance. This article proposes a semi–supervised learning approach applied using a k–Nearest Neighbour (k–NN) classifier to exploit unlabelled data and to expand the training set. The algorithmic implementation is described and the method is evaluated on the ImageCLEFmed modality classification benchmark. Results show that this approach achieves an improved performance over supervised k–NN and Random Forest classifiers. Moreover, medical case–based retrieval benefits from the modality filter

Understanding Data Search as a Socio-technical Practice

Open research data are heralded as having the potential to increase effectiveness, productivity, and reproducibility in science, but little is known about the actual practices involved in data search. The socio-technical problem of locating data for reuse is often reduced to the technological dimension of designing data search systems. We combine a bibliometric study of the current academic discourse around data search with interviews with data seekers. In this article, we explore how adopting a contextual, socio-technical perspective can help to understand user practices and behavior and ultimately help to improve the design of data discovery systems.Comment: 19 pages, 3 figures, 7 table

Use Case Oriented Medical Visual Information Retrieval & System Evaluation

Large amounts of medical visual data are produced daily in hospitals, while new imaging techniques continue to emerge. In addition, many images are made available continuously via publications in the scientific literature and can also be valuable for clinical routine, research and education. Information retrieval systems are useful tools to provide access to the biomedical literature and fulfil the information needs of medical professionals. The tools developed in this thesis can potentially help clinicians make decisions about difficult diagnoses via a case-based retrieval system based on a use case associated with a specific evaluation task. This system retrieves articles from the biomedical literature when querying with a case description and attached images. This thesis proposes a multimodal approach for medical case-based retrieval with focus on the integration of visual information connected to text. Furthermore, the ImageCLEFmed evaluation campaign was organised during this thesis promoting medical retrieval system evaluation

An affective computing and image retrieval approach to support diversified and emotion-aware reminiscence therapy sessions

A demência é uma das principais causas de dependência e incapacidade entre as pessoas idosas em todo o mundo. A terapia de reminiscência é uma terapia não farmacológica comummente utilizada nos cuidados com demência devido ao seu valor terapêutico para as pessoas com demência. Esta terapia é útil para criar uma comunicação envolvente entre pessoas com demência e o resto do mundo, utilizando as capacidades preservadas da memória a longo prazo, em vez de enfatizar as limitações existentes por forma a aliviar a experiência de fracasso e isolamento social. As soluções tecnológicas de assistência existentes melhoram a terapia de reminiscência ao proporcionar uma experiência mais envolvente para todos os participantes (pessoas com demência, familiares e clínicos), mas não estão livres de lacunas: a) os dados multimédia utilizados permanecem inalterados ao longo das sessões, e há uma falta de personalização para cada pessoa com demência; b) não têm em conta as emoções transmitidas pelos dados multimédia utilizados nem as reacções emocionais da pessoa com demência aos dados multimédia apresentados; c) a perspectiva dos cuidadores ainda não foi totalmente tida em consideração. Para superar estes desafios, seguimos uma abordagem de concepção centrada no utilizador através de inquéritos mundiais, entrevistas de seguimento, e grupos de discussão com cuidadores formais e informais para informar a concepção de soluções tecnológicas no âmbito dos cuidados de demência. Para cumprir com os requisitos identificados, propomos novos métodos que facilitam a inclusão de emoções no loop durante a terapia de reminiscência para personalizar e diversificar o conteúdo das sessões ao longo do tempo. As contribuições desta tese incluem: a) um conjunto de requisitos funcionais validados recolhidos com os cuidadores formais e informais, os resultados esperados com o cumprimento de cada requisito, e um modelo de arquitectura para o desenvolvimento de soluções tecnológicas de assistência para cuidados de demência; b) uma abordagem end-to-end para identificar automaticamente múltiplas informações emocionais transmitidas por imagens; c) uma abordagem para reduzir a quantidade de imagens que precisam ser anotadas pelas pessoas sem comprometer o desempenho dos modelos de reconhecimento; d) uma técnica de fusão tardia interpretável que combina dinamicamente múltiplos sistemas de recuperação de imagens com base em conteúdo para procurar eficazmente por imagens semelhantes para diversificar e personalizar o conjunto de imagens disponíveis para serem utilizadas nas sessões.Dementia is one of the major causes of dependency and disability among elderly subjects worldwide. Reminiscence therapy is an inexpensive non-pharmacological therapy commonly used within dementia care due to its therapeutic value for people with dementia. This therapy is useful to create engaging communication between people with dementia and the rest of the world by using the preserved abilities of long-term memory rather than emphasizing the existing impairments to alleviate the experience of failure and social isolation. Current assistive technological solutions improve reminiscence therapy by providing a more lively and engaging experience to all participants (people with dementia, family members, and clinicians), but they are not free of drawbacks: a) the multimedia data used remains unchanged throughout sessions, and there is a lack of customization for each person with dementia; b) they do not take into account the emotions conveyed by the multimedia data used nor the person with dementia’s emotional reactions to the multimedia presented; c) the caregivers’ perspective have not been fully taken into account yet. To overcome these challenges, we followed a usercentered design approach through worldwide surveys, follow-up interviews, and focus groups with formal and informal caregivers to inform the design of technological solutions within dementia care. To fulfil the requirements identified, we propose novel methods that facilitate the inclusion of emotions in the loop during reminiscence therapy to personalize and diversify the content of the sessions over time. Contributions from this thesis include: a) a set of validated functional requirements gathered from formal and informal caregivers, the expected outcomes with the fulfillment of each requirement, and an architecture’s template for the development of assistive technology solutions for dementia care; b) an end-to-end approach to automatically identify multiple emotional information conveyed by images; c) an approach to reduce the amount of images that need to be annotated by humans without compromising the recognition models’ performance; d) an interpretable late-fusion technique that dynamically combines multiple content-based image retrieval systems to effectively search for similar images to diversify and personalize the pool of images available to be used in sessions