DCU@TRECMed 2012: Using ad-hoc baselines for domain-specific retrieval

This paper describes the first participation of DCU in the TREC Medical Records Track (TRECMed). We performed some initial experiments on the 2011 TRECMed data based on the BM25 retrieval model. Surprisingly, we found that the standard BM25 model with default parameters, performs comparable to the best automatic runs submitted to TRECMed 2011 and would have resulted in rank four out of 29 participating groups. We expected that some form of domain adaptation would increase performance. However, results on the 2011 data proved otherwise: concept-based query expansion decreased performance, and filtering and reranking by term proximity also decreased performance slightly. We submitted four runs based on the BM25 retrieval model to TRECMed 2012 using standard BM25, standard query expansion, result filtering, and concept-based query expansion. Official results for 2012 confirm that domain-specific knowledge does not increase performance compared to the BM25 baseline as applied by us

An evaluation of Bradfordizing effects

The purpose of this paper is to apply and evaluate the bibliometric method Bradfordizing for information retrieval (IR) experiments. Bradfordizing is used for generating core document sets for subject-specific questions and to reorder result sets from distributed searches. The method will be applied and tested in a controlled scenario of scientific literature databases from social and political sciences, economics, psychology and medical science (SOLIS, SoLit, USB Köln Opac, CSA Sociological Abstracts, World Affairs Online, Psyndex and Medline) and 164 standardized topics. An evaluation of the method and its effects is carried out in two laboratory-based information retrieval experiments (CLEF and KoMoHe) using a controlled document corpus and human relevance assessments. The results show that Bradfordizing is a very robust method for re-ranking the main document types (journal articles and monographs) in today’s digital libraries (DL). The IR tests show that relevance distributions after re-ranking improve at a significant level if articles in the core are compared with articles in the succeeding zones. The items in the core are significantly more often assessed as relevant, than items in zone 2 (z2) or zone 3 (z3). The improvements between the zones are statistically significant based on the Wilcoxon signed-rank test and the paired T-Test

Building a semantically annotated corpus of clinical texts

In this paper, we describe the construction of a semantically annotated corpus of clinical texts for use in the development and evaluation of systems for automatically extracting clinically significant information from the textual component of patient records. The paper details the sampling of textual material from a collection of 20,000 cancer patient records, the development of a semantic annotation scheme, the annotation methodology, the distribution of annotations in the final corpus, and the use of the corpus for development of an adaptive information extraction system. The resulting corpus is the most richly semantically annotated resource for clinical text processing built to date, whose value has been demonstrated through its use in developing an effective information extraction system. The detailed presentation of our corpus construction and annotation methodology will be of value to others seeking to build high-quality semantically annotated corpora in biomedical domains

Applying the KISS principle for the CLEF-IP 2010 prior art candidate patent search task

We present our experiments and results for the DCU CNGL participation in the CLEF-IP 2010 Candidate Patent Search Task. Our work applied standard information retrieval (IR) techniques to patent search. In addition, a very simple citation extraction method was applied to improve the results. This was our second consecutive participation in the CLEF-IP tasks. Our experiments in 2009 showed that many sophisticated approach to IR do not improve the retrieval effectiveness for this task. For this reason of we decided to apply only simple methods in 2010. These were demonstrated to be highly competitive with other participants. DCU submitted three runs for the Prior Art Candidate Search Task, two of these runs achieved the second and third ranks among the 25 runs submitted by nine different participants. Our best run achieved MAP of 0.203, recall of 0.618, and PRES of 0.523

Benchmarking News Recommendations in a Living Lab

Most user-centric studies of information access systems in literature suffer from unrealistic settings or limited numbers of users who participate in the study. In order to address this issue, the idea of a living lab has been promoted. Living labs allow us to evaluate research hypotheses using a large number of users who satisfy their information need in a real context. In this paper, we introduce a living lab on news recommendation in real time. The living lab has first been organized as News Recommendation Challenge at ACM RecSys’13 and then as campaign-style evaluation lab NEWSREEL at CLEF’14. Within this lab, researchers were asked to provide news article recommendations to millions of users in real time. Different from user studies which have been performed in a laboratory, these users are following their own agenda. Consequently, laboratory bias on their behavior can be neglected. We outline the living lab scenario and the experimental setup of the two benchmarking events. We argue that the living lab can serve as reference point for the implementation of living labs for the evaluation of information access systems

Initial specification of the evaluation tasks "Use cases to bridge validation and benchmarking" PROMISE Deliverable 2.1

Evaluation of multimedia and multilingual information access systems needs to be performed from a usage oriented perspective. This document outlines use cases from the three use case domains of the PROMISE project and gives some initial pointers to how their respective characteristics can be extrapolated to determine and guide evaluation activities, both with respect to benchmarking and to validation of the usage hypotheses. The use cases will be developed further during the course of the evaluation activities and workshops projected to occur in coming CLEF conferences

Overview of VideoCLEF 2009: New perspectives on speech-based multimedia content enrichment

VideoCLEF 2009 offered three tasks related to enriching video content for improved multimedia access in a multilingual environment. For each task, video data (Dutch-language television, predominantly documentaries) accompanied by speech recognition transcripts were provided. The Subject Classification Task involved automatic tagging of videos with subject theme labels. The best performance was achieved by approaching subject tagging as an information retrieval task and using both speech recognition transcripts and archival metadata. Alternatively, classifiers were trained using either the training data provided or data collected from Wikipedia or via general Web search. The Affect Task involved detecting narrative peaks, defined as points where viewers perceive heightened dramatic tension. The task was carried out on the “Beeldenstorm” collection containing 45 short-form documentaries on the visual arts. The best runs exploited affective vocabulary and audience directed speech. Other approaches included using topic changes, elevated speaking pitch, increased speaking intensity and radical visual changes. The Linking Task, also called “Finding Related Resources Across Languages,” involved linking video to material on the same subject in a different language. Participants were provided with a list of multimedia anchors (short video segments) in the Dutch-language “Beeldenstorm” collection and were expected to return target pages drawn from English-language Wikipedia. The best performing methods used the transcript of the speech spoken during the multimedia anchor to build a query to search an index of the Dutch language Wikipedia. The Dutch Wikipedia pages returned were used to identify related English pages. Participants also experimented with pseudo-relevance feedback, query translation and methods that targeted proper names

PRES: A score metric for evaluating recall-oriented information retrieval applications

Information retrieval (IR) evaluation scores are generally designed to measure the effectiveness with which relevant documents are identified and retrieved. Many scores have been proposed for this purpose over the years. These have primarily focused on aspects of precision and recall, and while these are often discussed with equal importance, in practice most attention has been given to precision focused metrics. Even for recalloriented IR tasks of growing importance, such as patent retrieval, these precision based scores remain the primary evaluation measures. Our study examines different evaluation measures for a recall-oriented patent retrieval task and demonstrates the limitations of the current scores in comparing different IR systems for this task. We introduce PRES, a novel evaluation metric for this type of application taking account of recall and the user’s search effort. The behaviour of PRES is demonstrated on 48 runs from the CLEF-IP 2009 patent retrieval track. A full analysis of the performance of PRES shows its suitability for measuring the retrieval effectiveness of systems from a recall focused perspective taking into account the user’s expected search effort

A new metric for patent retrieval evaluation

Patent retrieval is generally considered to be a recall-oriented information retrieval task that is growing in importance. Despite this fact, precision based scores such as mean average precision (MAP) remain the primary evaluation measures for patent retrieval. Our study examines different evaluation measures for the recall-oriented patent retrieval task and shows the limitations of the current scores in comparing different IR systems for this task. We introduce PRES, a novel evaluation metric for this type of application taking account of recall and user search effort. The behaviour of PRES is demonstrated on 48 runs from the CLEF-IP 2009 patent retrieval track. A full analysis of the performance of PRES shows its suitability for measuring the retrieval effectiveness of systems from a recall focused perspective taking into account the expected search effort of patent searchers