The Distribution of heights of binary trees and other simple trees

The number of binary trees of fixed size and given height is estimated asymptotically near the peak of the distribution. There, a local limit theorem with convergence to a theta law is established. Large deviation bounds corresponding to large heights and small heights are also derived. The methods based on the analysis of singular iterations apply to any simple family of trees

Optimal Hierarchical Layouts for Cache-Oblivious Search Trees

This paper proposes a general framework for generating cache-oblivious layouts for binary search trees. A cache-oblivious layout attempts to minimize cache misses on any hierarchical memory, independent of the number of memory levels and attributes at each level such as cache size, line size, and replacement policy. Recursively partitioning a tree into contiguous subtrees and prescribing an ordering amongst the subtrees, Hierarchical Layouts generalize many commonly used layouts for trees such as in-order, pre-order and breadth-first. They also generalize the various flavors of the van Emde Boas layout, which have previously been used as cache-oblivious layouts. Hierarchical Layouts thus unify all previous attempts at deriving layouts for search trees. The paper then derives a new locality measure (the Weighted Edge Product) that mimics the probability of cache misses at multiple levels, and shows that layouts that reduce this measure perform better. We analyze the various degrees of freedom in the construction of Hierarchical Layouts, and investigate the relative effect of each of these decisions in the construction of cache-oblivious layouts. Optimizing the Weighted Edge Product for complete binary search trees, we introduce the MinWEP layout, and show that it outperforms previously used cache-oblivious layouts by almost 20%.Comment: Extended version with proofs added to the appendi

Extreme Value Statistics and Traveling Fronts: Various Applications

An intriguing connection between extreme value statistics and traveling fronts has been found recently in a number of diverse problems. In this brief review we outline a few such problems and consider their various applications.Comment: A brief review (6 pages, 2 figures) to appear in Physica A as part of the proceedings of Statphys-Kolkata IV (2002

The Brownian limit of separable permutations

We study random uniform permutations in an important class of pattern-avoiding permutations: the separable permutations. We describe the asymptotics of the number of occurrences of any fixed given pattern in such a random permutation in terms of the Brownian excursion. In the recent terminology of permutons, our work can be interpreted as the convergence of uniform random separable permutations towards a "Brownian separable permuton".Comment: 45 pages, 14 figures, incorporating referee's suggestion

Growth of the Brownian forest

Trees in Brownian excursions have been studied since the late 1980s. Forests in excursions of Brownian motion above its past minimum are a natural extension of this notion. In this paper we study a forest-valued Markov process which describes the growth of the Brownian forest. The key result is a composition rule for binary Galton--Watson forests with i.i.d. exponential branch lengths. We give elementary proofs of this composition rule and explain how it is intimately linked with Williams' decomposition for Brownian motion with drift.Comment: Published at http://dx.doi.org/10.1214/009117905000000422 in the Annals of Probability (http://www.imstat.org/aop/) by the Institute of Mathematical Statistics (http://www.imstat.org

Computational aspects of DNA mixture analysis

Statistical analysis of DNA mixtures is known to pose computational challenges due to the enormous state space of possible DNA profiles. We propose a Bayesian network representation for genotypes, allowing computations to be performed locally involving only a few alleles at each step. In addition, we describe a general method for computing the expectation of a product of discrete random variables using auxiliary variables and probability propagation in a Bayesian network, which in combination with the genotype network allows efficient computation of the likelihood function and various other quantities relevant to the inference. Lastly, we introduce a set of diagnostic tools for assessing the adequacy of the model for describing a particular dataset

Asymptotic genealogy of a critical branching process

Consider a continuous-time binary branching process conditioned to have population size n at some time t, and with a chance p for recording each extinct individual in the process. Within the family tree of this process, we consider the smallest subtree containing the genealogy of the extant individuals together with the genealogy of the recorded extinct individuals. We introduce a novel representation of such subtrees in terms of a point-process, and provide asymptotic results on the distribution of this point-process as the number of extant individuals increases. We motivate the study within the scope of a coherent analysis for an a priori model for macroevolution.Comment: 30 page