FishMark: A Linked Data Application Benchmark

Abstract. FishBase is an important species data collection produced by the FishBase Information and Research Group Inc (FIN), a not-forprofit NGO with the aim of collecting comprehensive information (from the taxonomic to the ecological) about all the world’s finned fish species. FishBase is exposed as a MySQL backed website (supporting a range of canned, although complex queries) and serves over 33 million hits per month. FishDelish is a transformation of FishBase into LinkedData weighing in at 1.38 billion triples. We have ported a substantial number of FishBase SQL queries to FishDelish SPARQL query which form the basis of a new linked data application benchmark (using our derivative of the Berlin SPARQL Benchmark harness). We use this benchmarking framework to compare the performance of the native MySQL application, the Virtuoso RDF triple store, and the Quest OBDA system on a fishbase.org like application.

On (in)tractability of OBDA with OWL 2 QL

We show that, although conjunctive queries over OWL 2 QL ontologies are reducible to database queries, no algorithm can construct such a reduction in polynomial time without changing the data. On the other hand, we give a polynomial reduction for OWL2QL ontologies without role inclusions

The combined approach to ontology-based data access

The use of ontologies for accessing data is one of the most exciting new applications of description logics in databases and other information systems. A realistic way of realising sufficiently scalable ontology- based data access in practice is by reduction to querying relational databases. In this paper, we describe the combined approach, which incorporates the information given by the ontology into the data and employs query rewriting to eliminate spurious answers. We illustrate this approach for ontologies given in the DL-Lite family of description logics and briefly discuss the results obtained for the EL family

On the evolution of the instance level of DL-lite knowledge bases

Recent papers address the issue of updating the instance level of knowledge bases expressed in Description Logic following a model-based approach. One of the outcomes of these papers is that the result of updating a knowledge base K is generally not expressible in the Description Logic used to express K. In this paper we introduce a formula-based approach to this problem, by revisiting some research work on formula-based updates developed in the '80s, in particular the WIDTIO (When In Doubt, Throw It Out) approach. We show that our operator enjoys desirable properties, including that both insertions and deletions according to such operator can be expressed in the DL used for the original KB. Also, we present polynomial time algorithms for the evolution of the instance level knowledge bases expressed in the most expressive Description Logics of the DL-lite family

Query-based comparison of OBDA specifications

An ontology-based data access (OBDA) system is composed of one or more data sources, an ontology that provides a conceptual view of the data, and declarative mappings that relate the data and ontology schemas. In order to debug and optimize such systems, it is important to be able to analyze and compare OBDA specifications. Recent work in this direction compared specifications using classical notions of equivalence and entailment, but an interesting alternative is to consider query-based notions, in which two specifications are deemed equivalent if they give the same answers to the considered query or class of queries for all possible data sources. In this paper, we define such query-based notions of entailment and equivalence of OBDA specifications and investigate the complexity of the resulting analysis tasks when the ontology is formulated in DL-LiteR

Polynomial conjunctive query rewriting under unary inclusion dependencies

Ontology-based data access (OBDA) is widely accepted as an important ingredient of the new generation of information systems. In the OBDA paradigm, potentially incomplete relational data is enriched by means of ontologies, representing intensional knowledge of the application domain. We consider the problem of conjunctive query answering in OBDA. Certain ontology languages have been identified as FO-rewritable (e.g., DL-Lite and sticky-join sets of TGDs), which means that the ontology can be incorporated into the user's query, thus reducing OBDA to standard relational query evaluation. However, all known query rewriting techniques produce queries that are exponentially large in the size of the user's query, which can be a serious issue for standard relational database engines. In this paper, we present a polynomial query rewriting for conjunctive queries under unary inclusion dependencies. On the other hand, we show that binary inclusion dependencies do not admit polynomial query rewriting algorithms

DL-lite with attributes and datatypes

We extend the DL-Lite languages by means of attributes and datatypes. Attributes -- a notion borrowed from data models -- associate concrete values from datatypes to abstract objects and in this way complement roles, which describe relationships between abstract objects. The extended languages remain tractable (with a notable exception) even though they contain both existential and (a limited form of) universal quantification. We present complexity results for two most important reasoning problems in DL-Lite: combined complexity of knowledge base satisfiability and data complexity of positive existential query answering