Wholeness as a Hierarchical Graph to Capture the Nature of Space

According to Christopher Alexander's theory of centers, a whole comprises numerous, recursively defined centers for things or spaces surrounding us. Wholeness is a type of global structure or life-giving order emerging from the whole as a field of the centers. The wholeness is an essential part of any complex system and exists, to some degree or other, in spaces. This paper defines wholeness as a hierarchical graph, in which individual centers are represented as the nodes and their relationships as the directed links. The hierarchical graph gets its name from the inherent scaling hierarchy revealed by the head/tail breaks, which is a classification scheme and visualization tool for data with a heavy-tailed distribution. We suggest that (1) the degrees of wholeness for individual centers should be measured by PageRank (PR) scores based on the notion that high-degree-of-life centers are those to which many high-degree-of-life centers point, and (2) that the hierarchical levels, or the ht-index of the PR scores induced by the head/tail breaks can characterize the degree of wholeness for the whole: the higher the ht-index, the more life or wholeness in the whole. Three case studies applied to the Alhambra building complex and the street networks of Manhattan and Sweden illustrate that the defined wholeness captures fairly well human intuitions on the degree of life for the geographic spaces. We further suggest that the mathematical model of wholeness be an important model of geographic representation, because it is topological oriented that enables us to see the underlying scaling structure. The model can guide geodesign, which should be considered as the wholeness-extending transformations that are essentially like the unfolding processes of seeds or embryos, for creating beautiful built and natural environments or with a high degree of wholeness.Comment: 14 pages, 7 figures, 2 table

One-class classifiers based on entropic spanning graphs

One-class classifiers offer valuable tools to assess the presence of outliers in data. In this paper, we propose a design methodology for one-class classifiers based on entropic spanning graphs. Our approach takes into account the possibility to process also non-numeric data by means of an embedding procedure. The spanning graph is learned on the embedded input data and the outcoming partition of vertices defines the classifier. The final partition is derived by exploiting a criterion based on mutual information minimization. Here, we compute the mutual information by using a convenient formulation provided in terms of the $\alpha$-Jensen difference. Once training is completed, in order to associate a confidence level with the classifier decision, a graph-based fuzzy model is constructed. The fuzzification process is based only on topological information of the vertices of the entropic spanning graph. As such, the proposed one-class classifier is suitable also for data characterized by complex geometric structures. We provide experiments on well-known benchmarks containing both feature vectors and labeled graphs. In addition, we apply the method to the protein solubility recognition problem by considering several representations for the input samples. Experimental results demonstrate the effectiveness and versatility of the proposed method with respect to other state-of-the-art approaches.Comment: Extended and revised version of the paper "One-Class Classification Through Mutual Information Minimization" presented at the 2016 IEEE IJCNN, Vancouver, Canad

Multimapper: Data Density Sensitive Topological Visualization

Mapper is an algorithm that summarizes the topological information contained in a dataset and provides an insightful visualization. It takes as input a point cloud which is possibly high-dimensional, a filter function on it and an open cover on the range of the function. It returns the nerve simplicial complex of the pullback of the cover. Mapper can be considered a discrete approximation of the topological construct called Reeb space, as analysed in the $1$-dimensional case by [Carriere et al.,2018]. Despite its success in obtaining insights in various fields such as in [Kamruzzaman et al., 2016], Mapper is an ad hoc technique requiring lots of parameter tuning. There is also no measure to quantify goodness of the resulting visualization, which often deviates from the Reeb space in practice. In this paper, we introduce a new cover selection scheme for data that reduces the obscuration of topological information at both the computation and visualisation steps. To achieve this, we replace global scale selection of cover with a scale selection scheme sensitive to local density of data points. We also propose a method to detect some deviations in Mapper from Reeb space via computation of persistence features on the Mapper graph.Comment: Accepted at ICDM