Characterizing the firing properties of an adaptive analog VLSI neuron

Ben Dayan Rubin D, Chicca E, Indiveri G. Characterizing the firing properties of an adaptive analog VLSI neuron. Biologically Inspired Approaches to Advanced Information Technology. 2004;3141:189-200.We describe the response properties of a compact, low power, analog circuit that implements a model of a leaky-Integrate & Fire (I&F) neuron, with spike-frequency adaptation, refractory period and voltage threshold modulation properties. We investigate the statistics of the circuit's output response by modulating its operating parameters, like refractory period and adaptation level and by changing the statistics of the input current. The results show a clear match with theoretical prediction and neurophysiological data in a given range of the parameter space. This analysis defines the chip's parameter working range and predicts its behavior in case of integration into large massively parallel very-large-scale-integration (VLSI) networks

Synchronization of electrically coupled resonate-and-fire neurons

Electrical coupling between neurons is broadly present across brain areas and is typically assumed to synchronize network activity. However, intrinsic properties of the coupled cells can complicate this simple picture. Many cell types with strong electrical coupling have been shown to exhibit resonant properties, and the subthreshold fluctuations arising from resonance are transmitted through electrical synapses in addition to action potentials. Using the theory of weakly coupled oscillators, we explore the effect of both subthreshold and spike-mediated coupling on synchrony in small networks of electrically coupled resonate-and-fire neurons, a hybrid neuron model with linear subthreshold dynamics and discrete post-spike reset. We calculate the phase response curve using an extension of the adjoint method that accounts for the discontinuity in the dynamics. We find that both spikes and resonant subthreshold fluctuations can jointly promote synchronization. The subthreshold contribution is strongest when the voltage exhibits a significant post-spike elevation in voltage, or plateau. Additionally, we show that the geometry of trajectories approaching the spiking threshold causes a "reset-induced shear" effect that can oppose synchrony in the presence of network asymmetry, despite having no effect on the phase-locking of symmetrically coupled pairs

Are the input parameters of white-noise-driven integrate-and-fire neurons uniquely determined by rate and CV?

Integrate-and-fire (IF) neurons have found widespread applications in computational neuroscience. Particularly important are stochastic versions of these models where the driving consists of a synaptic input modeled as white Gaussian noise with mean $\mu$ and noise intensity $D$. Different IF models have been proposed, the firing statistics of which depends nontrivially on the input parameters $\mu$ and $D$. In order to compare these models among each other, one must first specify the correspondence between their parameters. This can be done by determining which set of parameters ($\mu$, $D$) of each model is associated to a given set of basic firing statistics as, for instance, the firing rate and the coefficient of variation (CV) of the interspike interval (ISI). However, it is not clear {\em a priori} whether for a given firing rate and CV there is only one unique choice of input parameters for each model. Here we review the dependence of rate and CV on input parameters for the perfect, leaky, and quadratic IF neuron models and show analytically that indeed in these three models the firing rate and the CV uniquely determine the input parameters

A Conformal Fractional Derivative-based Leaky Integrate-and-Fire Neuron Model

Neuron model have been extensively studied and different models have been proposed. Nobel laureate Hodgkin-Huxley model is physiologically relevant and can demonstrate different neural behaviors, but it is mathematically complex. For this reason, simplified neuron models such as integrate-and-fire model and its derivatives are more popular in the literature to study neural populations. Lapicque’s integrate-and-fire model is proposed in 1907 and its leaky integrate-and-fire version is very popular due to its simplicity. In order to improve this simple model and capture different aspects of neurons, a variety of it have been proposed. Fractional order derivative-based neuron models are one of those varieties, which can show adaptation without necessitating additional differential equations. However, fractional-order derivatives could be computationally costly. Recently, a conformal fractional derivative (CFD) is suggested in literature. It is easy to understand and implement compared to the other methods. In this study, a CFD-based leaky integrate-and-fire neuron model is proposed. The model captures the adaptation in firing rate under sustained current injection. Results suggest that it could be used to easily and efficiently implement network models as well as to model different sensory afferents

KInNeSS: A Modular Framework for Computational Neuroscience

Making use of very detailed neurophysiological, anatomical, and behavioral data to build biological-realistic computational models of animal behavior is often a difficult task. Until recently, many software packages have tried to resolve this mismatched granularity with different approaches. This paper presents KInNeSS, the KDE Integrated NeuroSimulation Software environment, as an alternative solution to bridge the gap between data and model behavior. This open source neural simulation software package provides an expandable framework incorporating features such as ease of use, scalabiltiy, an XML based schema, and multiple levels of granularity within a modern object oriented programming design. KInNeSS is best suited to simulate networks of hundreds to thousands of branched multu-compartmental neurons with biophysical properties such as membrane potential, voltage-gated and ligand-gated channels, the presence of gap junctions of ionic diffusion, neuromodulation channel gating, the mechanism for habituative or depressive synapses, axonal delays, and synaptic plasticity. KInNeSS outputs include compartment membrane voltage, spikes, local-field potentials, and current source densities, as well as visualization of the behavior of a simulated agent. An explanation of the modeling philosophy and plug-in development is also presented. Further developement of KInNeSS is ongoing with the ultimate goal of creating a modular framework that will help researchers across different disciplines to effecitively collaborate using a modern neural simulation platform.Center for Excellence for Learning Education, Science, and Technology (SBE-0354378); Air Force Office of Scientific Research (F49620-01-1-0397); Office of Naval Research (N00014-01-1-0624

Fluctuations and information filtering in coupled populations of spiking neurons with adaptation

Finite-sized populations of spiking elements are fundamental to brain function, but also used in many areas of physics. Here we present a theory of the dynamics of finite-sized populations of spiking units, based on a quasi-renewal description of neurons with adaptation. We derive an integral equation with colored noise that governs the stochastic dynamics of the population activity in response to time-dependent stimulation and calculate the spectral density in the asynchronous state. We show that systems of coupled populations with adaptation can generate a frequency band in which sensory information is preferentially encoded. The theory is applicable to fully as well as randomly connected networks, and to leaky integrate-and-fire as well as to generalized spiking neurons with adaptation on multiple time scales