A general conservative extension theorem in process algebras with inequalities

We prove a general conservative extension theorem for transition system based process theories with easy-to-check and reasonable conditions. The core of this result is another general theorem which gives sufficient conditions for a system of operational rules and an extension of it in order to ensure conservativity, that is, provable transitions from an original term in the extension are the same as in the original system. As a simple corollary of the conservative extension theorem we prove a completeness theorem. We also prove a general theorem giving sufficient conditions to reduce the question of ground confluence modulo some equations for a large term rewriting system associated with an equational process theory to a small term rewriting system under the condition that the large system is a conservative extension of the small one. We provide many applications to show that our results are useful. The applications include (but are not limited to) various real and discrete time settings in ACP, ATP, and CCS and the notions projection, renaming, stage operator, priority, recursion, the silent step, autonomous actions, the empty process, divergence, etc

SBML models and MathSBML

MathSBML is an open-source, freely-downloadable Mathematica package that facilitates working with Systems Biology Markup Language (SBML) models. SBML is a toolneutral,computer-readable format for representing models of biochemical reaction networks, applicable to metabolic networks, cell-signaling pathways, genomic regulatory networks, and other modeling problems in systems biology that is widely supported by the systems biology community. SBML is based on XML, a standard medium for representing and transporting data that is widely supported on the internet as well as in computational biology and bioinformatics. Because SBML is tool-independent, it enables model transportability, reuse, publication and survival. In addition to MathSBML, a number of other tools that support SBML model examination and manipulation are provided on the sbml.org website, including libSBML, a C/C++ library for reading SBML models; an SBML Toolbox for MatLab; file conversion programs; an SBML model validator and visualizer; and SBML specifications and schemas. MathSBML enables SBML file import to and export from Mathematica as well as providing an API for model manipulation and simulation

Observation and abstract behaviour in specification and implementation of state-based systems

Classical algebraic specification is an accepted framework for specification. A criticism which applies is the fact that it is functional, not based on a notion of state as most software development and implementation languages are. We formalise the idea of a state-based object or abstract machine using algebraic means. In contrast to similar approaches we consider dynamic logic instead of equational logic as the framework for specification and implementation. The advantage is a more expressive language allowing us to specify safety and liveness conditions. It also allows a clearer distinction of functional and state-based parts which require different treatment in order to achieve behavioural abstraction when necessary. We shall in particular focus on abstract behaviour and observation. A behavioural notion of satisfaction for state-elements is needed in order to abstract from irrelevant details of the state realisation

Specifying Reusable Components

Reusable software components need expressive specifications. This paper outlines a rigorous foundation to model-based contracts, a method to equip classes with strong contracts that support accurate design, implementation, and formal verification of reusable components. Model-based contracts conservatively extend the classic Design by Contract with a notion of model, which underpins the precise definitions of such concepts as abstract equivalence and specification completeness. Experiments applying model-based contracts to libraries of data structures suggest that the method enables accurate specification of practical software

JWalk: a tool for lazy, systematic testing of java classes by design introspection and user interaction

Popular software testing tools, such as JUnit, allow frequent retesting of modified code; yet the manually created test scripts are often seriously incomplete. A unit-testing tool called JWalk has therefore been developed to address the need for systematic unit testing within the context of agile methods. The tool operates directly on the compiled code for Java classes and uses a new lazy method for inducing the changing design of a class on the fly. This is achieved partly through introspection, using Java’s reflection capability, and partly through interaction with the user, constructing and saving test oracles on the fly. Predictive rules reduce the number of oracle values that must be confirmed by the tester. Without human intervention, JWalk performs bounded exhaustive exploration of the class’s method protocols and may be directed to explore the space of algebraic constructions, or the intended design state-space of the tested class. With some human interaction, JWalk performs up to the equivalent of fully automated state-based testing, from a specification that was acquired incrementally

Facilitating modular property-preserving extensions of programming languages

We will explore an approach to modular programming language descriptions and extensions in a denotational style. Based on a language core, language features are added stepwise on the core. Language features can be described separated from each other in a self-contained, orthogonal way. We present an extension semantics framework consisting of mechanisms to adapt semantics of a basic language to new structural requirements in an extended language preserving the behaviour of programs of the basic language. Common templates of extension are provided. These can be collected in extension libraries accessible to and extendible by language designers. Mechanisms to extend these libraries are provided. A notation for describing language features embedding these semantics extensions is presented

Abstract State Machines 1988-1998: Commented ASM Bibliography

An annotated bibliography of papers which deal with or use Abstract State Machines (ASMs), as of January 1998.Comment: Also maintained as a BibTeX file at http://www.eecs.umich.edu/gasm

Probabilistic thread algebra

We add probabilistic features to basic thread algebra and its extensions with thread-service interaction and strategic interleaving. Here, threads represent the behaviours produced by instruction sequences under execution and services represent the behaviours exhibited by the components of execution environments of instruction sequences. In a paper concerned with probabilistic instruction sequences, we proposed several kinds of probabilistic instructions and gave an informal explanation for each of them. The probabilistic features added to the extension of basic thread algebra with thread-service interaction make it possible to give a formal explanation in terms of non-probabilistic instructions and probabilistic services. The probabilistic features added to the extensions of basic thread algebra with strategic interleaving make it possible to cover strategies corresponding to probabilistic scheduling algorithms.Comment: 25 pages (arXiv admin note: text overlap with arXiv:1408.2955, arXiv:1402.4950); some simplifications made; substantially revise