12,698 research outputs found
A Survey on Deep Learning in Medical Image Analysis
Deep learning algorithms, in particular convolutional networks, have rapidly
become a methodology of choice for analyzing medical images. This paper reviews
the major deep learning concepts pertinent to medical image analysis and
summarizes over 300 contributions to the field, most of which appeared in the
last year. We survey the use of deep learning for image classification, object
detection, segmentation, registration, and other tasks and provide concise
overviews of studies per application area. Open challenges and directions for
future research are discussed.Comment: Revised survey includes expanded discussion section and reworked
introductory section on common deep architectures. Added missed papers from
before Feb 1st 201
Deep Cytometry: Deep learning with Real-time Inference in Cell Sorting and Flow Cytometry
Deep learning has achieved spectacular performance in image and speech
recognition and synthesis. It outperforms other machine learning algorithms in
problems where large amounts of data are available. In the area of measurement
technology, instruments based on the photonic time stretch have established
record real-time measurement throughput in spectroscopy, optical coherence
tomography, and imaging flow cytometry. These extreme-throughput instruments
generate approximately 1 Tbit/s of continuous measurement data and have led to
the discovery of rare phenomena in nonlinear and complex systems as well as new
types of biomedical instruments. Owing to the abundance of data they generate,
time-stretch instruments are a natural fit to deep learning classification.
Previously we had shown that high-throughput label-free cell classification
with high accuracy can be achieved through a combination of time-stretch
microscopy, image processing and feature extraction, followed by deep learning
for finding cancer cells in the blood. Such a technology holds promise for
early detection of primary cancer or metastasis. Here we describe a new deep
learning pipeline, which entirely avoids the slow and computationally costly
signal processing and feature extraction steps by a convolutional neural
network that directly operates on the measured signals. The improvement in
computational efficiency enables low-latency inference and makes this pipeline
suitable for cell sorting via deep learning. Our neural network takes less than
a few milliseconds to classify the cells, fast enough to provide a decision to
a cell sorter for real-time separation of individual target cells. We
demonstrate the applicability of our new method in the classification of OT-II
white blood cells and SW-480 epithelial cancer cells with more than 95%
accuracy in a label-free fashion
U-Net and its variants for medical image segmentation: theory and applications
U-net is an image segmentation technique developed primarily for medical
image analysis that can precisely segment images using a scarce amount of
training data. These traits provide U-net with a very high utility within the
medical imaging community and have resulted in extensive adoption of U-net as
the primary tool for segmentation tasks in medical imaging. The success of
U-net is evident in its widespread use in all major image modalities from CT
scans and MRI to X-rays and microscopy. Furthermore, while U-net is largely a
segmentation tool, there have been instances of the use of U-net in other
applications. As the potential of U-net is still increasing, in this review we
look at the various developments that have been made in the U-net architecture
and provide observations on recent trends. We examine the various innovations
that have been made in deep learning and discuss how these tools facilitate
U-net. Furthermore, we look at image modalities and application areas where
U-net has been applied.Comment: 42 pages, in IEEE Acces
Affective Medicine: a review of Affective Computing efforts in Medical Informatics
Background: Affective computing (AC) is concerned with emotional interactions performed with and through computers. It is defined as “computing that relates to, arises from, or deliberately influences emotions”. AC enables investigation and understanding of the relation between human emotions and health as well as application of assistive and useful technologies in the medical domain. Objectives: 1) To review the general state of the art in AC and its applications in medicine, and 2) to establish synergies between the research communities of AC and medical informatics. Methods: Aspects related to the human affective state as a determinant of the human health are discussed, coupled with an illustration of significant AC research and related literature output. Moreover, affective communication channels are described and their range of application fields is explored through illustrative examples. Results: The presented conferences, European research projects and research publications illustrate the recent increase of interest in the AC area by the medical community. Tele-home healthcare, AmI, ubiquitous monitoring, e-learning and virtual communities with emotionally expressive characters for elderly or impaired people are few areas where the potential of AC has been realized and applications have emerged. Conclusions: A number of gaps can potentially be overcome through the synergy of AC and medical informatics. The application of AC technologies parallels the advancement of the existing state of the art and the introduction of new methods. The amount of work and projects reviewed in this paper witness an ambitious and optimistic synergetic future of the affective medicine field
Data synthesis and adversarial networks: A review and meta-analysis in cancer imaging
Despite technological and medical advances, the detection, interpretation, and treatment of cancer based on imaging data continue to pose significant challenges. These include inter-observer variability, class imbalance, dataset shifts, inter- and intra-tumour heterogeneity, malignancy determination, and treatment effect uncertainty. Given the recent advancements in image synthesis, Generative Adversarial Networks (GANs), and adversarial training, we assess the potential of these technologies to address a number of key challenges of cancer imaging. We categorise these challenges into (a) data scarcity and imbalance, (b) data access and privacy, (c) data annotation and segmentation, (d) cancer detection and diagnosis, and (e) tumour profiling, treatment planning and monitoring. Based on our analysis of 164 publications that apply adversarial training techniques in the context of cancer imaging, we highlight multiple underexplored solutions with research potential. We further contribute the Synthesis Study Trustworthiness Test (SynTRUST), a meta-analysis framework for assessing the validation rigour of medical image synthesis studies. SynTRUST is based on 26 concrete measures of thoroughness, reproducibility, usefulness, scalability, and tenability. Based on SynTRUST, we analyse 16 of the most promising cancer imaging challenge solutions and observe a high validation rigour in general, but also several desirable improvements. With this work, we strive to bridge the gap between the needs of the clinical cancer imaging community and the current and prospective research on data synthesis and adversarial networks in the artificial intelligence community
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