CALIBRATION OF AN ULTRASONIC TRANSMISSIVE COMPUTED TOMOGRAPHY SYSTEM

Tato dizertace je zaměřena na medicínskou zobrazovací modalitu – ultrazvukovou počítačovou tomografii – a algoritmy zlepšující kvalitu zobrazení, zejména kalibraci USCT přístroje. USCT je novou modalitou kombinující ultrazvukový přenos signálů a principy tomografické rekonstrukce obrazů vyvíjených pro jiné tomografické systémy. V principu lze vytvořit kvantitativní 3D obrazové objemy s vysokým rozlišením a kontrastem. USCT je primárně určeno pro diagnózu rakoviny prsu. Autor spolupracoval na projektu Institutu Zpracování dat a Elektroniky, Forschungszentrum Karlsruhe, kde je USCT systém vyvíjen. Jeden ze zásadních problémů prototypu USCT v Karlsruhe byla absence kalibrace. Tisíce ultrazvukových měničů se liší v citlivosti, směrovosti a frekvenční odezvě. Tyto parametry jsou navíc proměnné v čase. Další a mnohem závažnější problém byl v pozičních odchylkách jednotlivých měničů. Všechny tyto aspekty mají vliv na konečnou kvalitu rekonstruovaných obrazů. Problém kalibrace si autor zvolil jako hlavní téma dizertace. Tato dizertace popisuje nové metody v oblastech rekonstrukce útlumových obrazů, kalibrace citlivosti měničů a zejména geometrická kalibrace pozic měničů. Tyto metody byly implementovány a otestovány na reálných datech pocházejících z prototypu USCT z Karlsruhe.This dissertation is centered on a medical imaging modality – the ultrasonic computed tomography (USCT) – and algorithms which improve the resulting image quality, namely the calibration of a USCT device. The USCT is a novel imaging modality which combines the phenomenon of ultrasound and image reconstruction principles developed for other tomographic systems. It is capable of producing quantitative 3D image volumes with high resolution and tissue contrast and is primarily aimed at breast cancer diagnosis. The author was involved in a joint research project at the Institute of Data Processing and Electronics, Forschungszentrum Karlsruhe (German National Research Center), where a USCT system is being developed. One of the main problems in the Karlsruhe USCT prototype was the absence of any calibration. The thousands of transducers used in the system have deviations in sensitivity, directivity, and frequency response. These parameters change over time as the transducers age. Also the mechanical positioning of the transducer elements is not precise. All these aspects greatly affect the overall quality of the reconstructed images. The problem of calibration of a USCT system was chosen as the main topic for this dissertation. The dissertation thesis presents novel methods in the area of reconstruction of attenuation images, sensitivity calibration, and mainly geometrical calibration. The methods were implemented and tested on real data generated by the Karlsruhe USCT device.

Towards Omni-Tomography—Grand Fusion of Multiple Modalities for Simultaneous Interior Tomography

We recently elevated interior tomography from its origin in computed tomography (CT) to a general tomographic principle, and proved its validity for other tomographic modalities including SPECT, MRI, and others. Here we propose “omni-tomography”, a novel concept for the grand fusion of multiple tomographic modalities for simultaneous data acquisition in a region of interest (ROI). Omni-tomography can be instrumental when physiological processes under investigation are multi-dimensional, multi-scale, multi-temporal and multi-parametric. Both preclinical and clinical studies now depend on in vivo tomography, often requiring separate evaluations by different imaging modalities. Over the past decade, two approaches have been used for multimodality fusion: Software based image registration and hybrid scanners such as PET-CT, PET-MRI, and SPECT-CT among others. While there are intrinsic limitations with both approaches, the main obstacle to the seamless fusion of multiple imaging modalities has been the bulkiness of each individual imager and the conflict of their physical (especially spatial) requirements. To address this challenge, omni-tomography is now unveiled as an emerging direction for biomedical imaging and systems biomedicine

Métodos de reconstrucción en dominio temporal para tomografía por transmisión de ultrasonidos

Tesis inédita de la Universidad Complutense de Madrid, Facultad de Ciencias Físicas, Departamento de Física Atómica, Molecular y Nuclear, leída el 06-06-2017Breast cancer (BC) is the leading cause of cancer-related death for women in Europe, and the second one after lung cancer in the US [World Cancer Report, 2008]. Early detection is very important for the survival rate of BC, because the smaller the local extension of the neoplasia, the better the output of the surgical treatments employed. Besides, early detection increases the possibility of preserving the breast and decreases the probability of needing more invasive treatments [Secretaría de Salud, 2007, Alteri et al., 2011]. Mammography is currently the standard procedure employed for breast screening programs around the world. Nevertheless, its efficiency has been questioned lately because: (i) it generates many abnormal findings not related to cancer, (ii) it requires irradiating the patient and (iii) it has low specificity with dense breasts [Santen and Mansel, 2005]. Consequently, complementary techniques to mammography are being proposed to improve the detection and characterization of BC. Among these techniques, is the Ultrasound Computed Tomography (USCT), in reflection mode (which provides qualitative maps with the concentration of scatterers in the tissue), and transmission mode (which provides quantitative maps of the sound speed (SS) and the acoustic attenuation (AA) of the tissues). The images provided by the transmission modality have been proposed for BC detection as they can improve the detectability of malignancies in the breast [Mast, 2000, Duric et al., 2009]...El cáncer de mama (CM) es el cáncer más mortal entre las mujeres europeas, y el segundo más común en Estados Unidos [World Cancer Report, 2008]. La detección temprana es un factor que condiciona en gran medida la tasa de supervivencia a esta enfermedad, ya que a menor tamaño de la neoplasia detectada, mejores resultados pueden esperarse para los tratamientos quirúrgicos que se realicen. Además, la detección temprana aumenta la posibilidad de conservar la mama después de la cirugía y disminuye la necesidad de emplear otros tratamientos más invasivos[Secretaría de Salud, 2007, Alteri et al., 2011]. La mamografía es actualmente el procedimiento estándar que se emplea para el cribado del CM. Sin embargo, en los últimas años su eficiencia está siendo muy cuestionada por varios factores: (i) alta tasa de falsos positivos, (ii) requiere la irradiación del paciente y (iii) baja especificidad en mamas densas 2. Debido a lo anterior, para mejorar la detección y caracterización del CM se han propuesto varias técnicas complementarias. Entre ellas está la tomografía ultrasónica (TU), que es una técnica en desarrollo que presenta dos modalidades principales: la reflexión (proporciona mapas cualitativos de la concentración de dispersores en el tejido) y la transmisión (proporciona mapas cuantitativos de la velocidad y atenuación del sonido en el tejido). Los mapas del modo transmisión han sido propuestos como una eficiente alternativa, libre de radiación, para la detección del CM, ya que proporcionan alto contraste y especificidad [Mast, 2000, Duric et al., 2009]...Depto. de Estructura de la Materia, Física Térmica y ElectrónicaFac. de Ciencias FísicasTRUEunpu

Real-time super-resolution mapping of locally anisotropic grain orientations for ultrasonic non-destructive evaluation of crystalline material

Estimating the spatially varying microstructures of heterogeneous and locally anisotropic media non-destructively is necessary for the accurate detection of flaws and reliable monitoring of manufacturing processes. Conventional algorithms used for solving this inverse problem come with significant computational cost, particularly in the case of high-dimensional, nonlinear tomographic problems, and are thus not suitable for near-real-time applications. In this paper, for the first time, we propose a framework which uses deep neural networks (DNNs) with full aperture, pitch-catch and pulse-echo transducer configurations, to reconstruct material maps of crystallographic orientation. We also present the first application of generative adversarial networks (GANs) to achieve super-resolution of ultrasonic tomographic images, providing a factor-four increase in image resolution and up to a 50% increase in structural similarity. The importance of including appropriate prior knowledge in the GAN training data set to increase inversion accuracy is demonstrated: known information about the material's structure should be represented in the training data. We show that after a computationally expensive training process, the DNNs and GANs can be used in less than 1 second (0.9 s on a standard desktop computer) to provide a high-resolution map of the material's grain orientations, addressing the challenge of significant computational cost faced by conventional tomography algorithms

Progress Report No. 18

Progress report of the Biomedical Computer Laboratory, covering period 1 July 1981 to 30 June 1982

Progress Report No. 17

Progress report of the Biomedical Computer Laboratory, covering period 1 July 1980 to 30 June 1981