"Going back to our roots": second generation biocomputing

Researchers in the field of biocomputing have, for many years, successfully "harvested and exploited" the natural world for inspiration in developing systems that are robust, adaptable and capable of generating novel and even "creative" solutions to human-defined problems. However, in this position paper we argue that the time has now come for a reassessment of how we exploit biology to generate new computational systems. Previous solutions (the "first generation" of biocomputing techniques), whilst reasonably effective, are crude analogues of actual biological systems. We believe that a new, inherently inter-disciplinary approach is needed for the development of the emerging "second generation" of bio-inspired methods. This new modus operandi will require much closer interaction between the engineering and life sciences communities, as well as a bidirectional flow of concepts, applications and expertise. We support our argument by examining, in this new light, three existing areas of biocomputing (genetic programming, artificial immune systems and evolvable hardware), as well as an emerging area (natural genetic engineering) which may provide useful pointers as to the way forward.Comment: Submitted to the International Journal of Unconventional Computin

Six networks on a universal neuromorphic computing substrate

In this study, we present a highly configurable neuromorphic computing substrate and use it for emulating several types of neural networks. At the heart of this system lies a mixed-signal chip, with analog implementations of neurons and synapses and digital transmission of action potentials. Major advantages of this emulation device, which has been explicitly designed as a universal neural network emulator, are its inherent parallelism and high acceleration factor compared to conventional computers. Its configurability allows the realization of almost arbitrary network topologies and the use of widely varied neuronal and synaptic parameters. Fixed-pattern noise inherent to analog circuitry is reduced by calibration routines. An integrated development environment allows neuroscientists to operate the device without any prior knowledge of neuromorphic circuit design. As a showcase for the capabilities of the system, we describe the successful emulation of six different neural networks which cover a broad spectrum of both structure and functionality

The importance of space and time in neuromorphic cognitive agents

Artificial neural networks and computational neuroscience models have made tremendous progress, allowing computers to achieve impressive results in artificial intelligence (AI) applications, such as image recognition, natural language processing, or autonomous driving. Despite this remarkable progress, biological neural systems consume orders of magnitude less energy than today's artificial neural networks and are much more agile and adaptive. This efficiency and adaptivity gap is partially explained by the computing substrate of biological neural processing systems that is fundamentally different from the way today's computers are built. Biological systems use in-memory computing elements operating in a massively parallel way rather than time-multiplexed computing units that are reused in a sequential fashion. Moreover, activity of biological neurons follows continuous-time dynamics in real, physical time, instead of operating on discrete temporal cycles abstracted away from real-time. Here, we present neuromorphic processing devices that emulate the biological style of processing by using parallel instances of mixed-signal analog/digital circuits that operate in real time. We argue that this approach brings significant advantages in efficiency of computation. We show examples of embodied neuromorphic agents that use such devices to interact with the environment and exhibit autonomous learning

An efficient automated parameter tuning framework for spiking neural networks

As the desire for biologically realistic spiking neural networks (SNNs) increases, tuning the enormous number of open parameters in these models becomes a difficult challenge. SNNs have been used to successfully model complex neural circuits that explore various neural phenomena such as neural plasticity, vision systems, auditory systems, neural oscillations, and many other important topics of neural function. Additionally, SNNs are particularly well-adapted to run on neuromorphic hardware that will support biological brain-scale architectures. Although the inclusion of realistic plasticity equations, neural dynamics, and recurrent topologies has increased the descriptive power of SNNs, it has also made the task of tuning these biologically realistic SNNs difficult. To meet this challenge, we present an automated parameter tuning framework capable of tuning SNNs quickly and efficiently using evolutionary algorithms (EA) and inexpensive, readily accessible graphics processing units (GPUs). A sample SNN with 4104 neurons was tuned to give V1 simple cell-like tuning curve responses and produce self-organizing receptive fields (SORFs) when presented with a random sequence of counterphase sinusoidal grating stimuli. A performance analysis comparing the GPU-accelerated implementation to a single-threaded central processing unit (CPU) implementation was carried out and showed a speedup of 65× of the GPU implementation over the CPU implementation, or 0.35 h per generation for GPU vs. 23.5 h per generation for CPU. Additionally, the parameter value solutions found in the tuned SNN were studied and found to be stable and repeatable. The automated parameter tuning framework presented here will be of use to both the computational neuroscience and neuromorphic engineering communities, making the process of constructing and tuning large-scale SNNs much quicker and easier

Biologically Inspired Computer Vision/ Applications of Computational Models of Primate Visual Systems in Computer Vision and Image Processing

Biologically Inspired Computer VisionApplications of Computational Models of Primate Visual Systems in Computer Vision and Image Processing Reza Hojjaty Saeedy Abstract Biological vision systems are remarkable at extracting and analyzing the information that is essential for vital functional needs. They perform all these tasks with both high sensitivity and strong reliability. They can efficiently and quickly solve most of the difficult computa- tional problems that are still challenging for artificial systems, such as scene segmentation, 3D/depth perception, motion recognition, etc. So it is no surprise that biological vision systems have been a source of inspiration for computer vision problems. In this research, we aim to provide a computer vision task centric framework out of models primarily originating in biological vision studies. We try to address two specific tasks here: saliency detection and object classification. In both of these tasks we use features extracted from computational models of biological vision systems as a starting point for further processing. Saliency maps are 2D topographic maps that catch the most conspicuous regions of a scene, i.e. the pixels in an image that stand out against their neighboring pixels. So these maps can be thought of as representations of the human attention process and thus have a lot of applications in computer vision. We propose a cascade that combines two well- known computational models for perception of color and orientation in order to simulate the responses of the primary areas of the primate visual cortex. We use these responses as inputs to a spiking neural network(SNN) and finally the output of this SNN will serve as the input to our post-processing algorithm for saliency detection. Object classification/detection is the most studied task in computer vision and machine learning and it is interesting that while it looks trivial for humans it is a difficult problem for artificial systems. For this part of the thesis we also design a pipeline including feature extraction using biologically inspired systems, manifold learning for dimensionality reduction and self-organizing(vector quantization) neural network as a supervised method for prototype learning

Biologically Inspired Computer Vision/ Applications of Computational Models of Primate Visual Systems in Computer Vision and Image Processing

Biologically Inspired Computer VisionApplications of Computational Models of Primate Visual Systems in Computer Vision and Image Processing Reza Hojjaty Saeedy Abstract Biological vision systems are remarkable at extracting and analyzing the information that is essential for vital functional needs. They perform all these tasks with both high sensitivity and strong reliability. They can efficiently and quickly solve most of the difficult computa- tional problems that are still challenging for artificial systems, such as scene segmentation, 3D/depth perception, motion recognition, etc. So it is no surprise that biological vision systems have been a source of inspiration for computer vision problems. In this research, we aim to provide a computer vision task centric framework out of models primarily originating in biological vision studies. We try to address two specific tasks here: saliency detection and object classification. In both of these tasks we use features extracted from computational models of biological vision systems as a starting point for further processing. Saliency maps are 2D topographic maps that catch the most conspicuous regions of a scene, i.e. the pixels in an image that stand out against their neighboring pixels. So these maps can be thought of as representations of the human attention process and thus have a lot of applications in computer vision. We propose a cascade that combines two well- known computational models for perception of color and orientation in order to simulate the responses of the primary areas of the primate visual cortex. We use these responses as inputs to a spiking neural network(SNN) and finally the output of this SNN will serve as the input to our post-processing algorithm for saliency detection. Object classification/detection is the most studied task in computer vision and machine learning and it is interesting that while it looks trivial for humans it is a difficult problem for artificial systems. For this part of the thesis we also design a pipeline including feature extraction using biologically inspired systems, manifold learning for dimensionality reduction and self-organizing(vector quantization) neural network as a supervised method for prototype learning