Selection Bias Tracking and Detailed Subset Comparison for High-Dimensional Data

The collection of large, complex datasets has become common across a wide variety of domains. Visual analytics tools increasingly play a key role in exploring and answering complex questions about these large datasets. However, many visualizations are not designed to concurrently visualize the large number of dimensions present in complex datasets (e.g. tens of thousands of distinct codes in an electronic health record system). This fact, combined with the ability of many visual analytics systems to enable rapid, ad-hoc specification of groups, or cohorts, of individuals based on a small subset of visualized dimensions, leads to the possibility of introducing selection bias--when the user creates a cohort based on a specified set of dimensions, differences across many other unseen dimensions may also be introduced. These unintended side effects may result in the cohort no longer being representative of the larger population intended to be studied, which can negatively affect the validity of subsequent analyses. We present techniques for selection bias tracking and visualization that can be incorporated into high-dimensional exploratory visual analytics systems, with a focus on medical data with existing data hierarchies. These techniques include: (1) tree-based cohort provenance and visualization, with a user-specified baseline cohort that all other cohorts are compared against, and visual encoding of the drift for each cohort, which indicates where selection bias may have occurred, and (2) a set of visualizations, including a novel icicle-plot based visualization, to compare in detail the per-dimension differences between the baseline and a user-specified focus cohort. These techniques are integrated into a medical temporal event sequence visual analytics tool. We present example use cases and report findings from domain expert user interviews.Comment: IEEE Transactions on Visualization and Computer Graphics (TVCG), Volume 26 Issue 1, 2020. Also part of proceedings for IEEE VAST 201

Parallelized and Vectorized Tracking Using Kalman Filters with CMS Detector Geometry and Events

The High-Luminosity Large Hadron Collider at CERN will be characterized by greater pileup of events and higher occupancy, making the track reconstruction even more computationally demanding. Existing algorithms at the LHC are based on Kalman filter techniques with proven excellent physics performance under a variety of conditions. Starting in 2014, we have been developing Kalman-filter-based methods for track finding and fitting adapted for many-core SIMD processors that are becoming dominant in high-performance systems. This paper summarizes the latest extensions to our software that allow it to run on the realistic CMS-2017 tracker geometry using CMSSW-generated events, including pileup. The reconstructed tracks can be validated against either the CMSSW simulation that generated the hits, or the CMSSW reconstruction of the tracks. In general, the code's computational performance has continued to improve while the above capabilities were being added. We demonstrate that the present Kalman filter implementation is able to reconstruct events with comparable physics performance to CMSSW, while providing generally better computational performance. Further plans for advancing the software are discussed

Gaze Distribution Analysis and Saliency Prediction Across Age Groups

Knowledge of the human visual system helps to develop better computational models of visual attention. State-of-the-art models have been developed to mimic the visual attention system of young adults that, however, largely ignore the variations that occur with age. In this paper, we investigated how visual scene processing changes with age and we propose an age-adapted framework that helps to develop a computational model that can predict saliency across different age groups. Our analysis uncovers how the explorativeness of an observer varies with age, how well saliency maps of an age group agree with fixation points of observers from the same or different age groups, and how age influences the center bias. We analyzed the eye movement behavior of 82 observers belonging to four age groups while they explored visual scenes. Explorativeness was quantified in terms of the entropy of a saliency map, and area under the curve (AUC) metrics was used to quantify the agreement analysis and the center bias. These results were used to develop age adapted saliency models. Our results suggest that the proposed age-adapted saliency model outperforms existing saliency models in predicting the regions of interest across age groups

Selection Bias in News Coverage: Learning it, Fighting it

News entities must select and filter the coverage they broadcast through their respective channels since the set of world events is too large to be treated exhaustively. The subjective nature of this filtering induces biases due to, among other things, resource constraints, editorial guidelines, ideological affinities, or even the fragmented nature of the information at a journalist's disposal. The magnitude and direction of these biases are, however, widely unknown. The absence of ground truth, the sheer size of the event space, or the lack of an exhaustive set of absolute features to measure make it difficult to observe the bias directly, to characterize the leaning's nature and to factor it out to ensure a neutral coverage of the news. In this work, we introduce a methodology to capture the latent structure of media's decision process on a large scale. Our contribution is multi-fold. First, we show media coverage to be predictable using personalization techniques, and evaluate our approach on a large set of events collected from the GDELT database. We then show that a personalized and parametrized approach not only exhibits higher accuracy in coverage prediction, but also provides an interpretable representation of the selection bias. Last, we propose a method able to select a set of sources by leveraging the latent representation. These selected sources provide a more diverse and egalitarian coverage, all while retaining the most actively covered events

General Defocusing Particle Tracking: fundamentals and uncertainty assessment

General Defocusing Particle Tracking (GDPT) is a single-camera, three-dimensional particle tracking method that determines the particle depth positions from the defocusing patterns of the corresponding particle images. GDPT relies on a reference set of experimental particle images which is used to predict the depth position of measured particle images of similar shape. While several implementations of the method are possible, its accuracy is ultimately limited by some intrinsic properties of the acquired data, such as the signal-to-noise ratio, the particle concentration, as well as the characteristics of the defocusing patterns. GDPT has been applied in different fields by different research groups, however, a deeper description and analysis of the method fundamentals has hitherto not been available. In this work, we first identity the fundamental elements that characterize a GDPT measurement. Afterwards, we present a standardized framework based on synthetic images to assess the performance of GDPT implementations in terms of measurement uncertainty and relative number of measured particles. Finally, we provide guidelines to assess the uncertainty of experimental GDPT measurements, where true values are not accessible and additional image aberrations can lead to bias errors. The data were processed using DefocusTracker, an open-source GDPT software. The datasets were created using the synthetic image generator MicroSIG and have been shared in a freely-accessible repository

Multiparticle azimuthal correlations for extracting event-by-event elliptic and triangular flow in Au + Au collisions at sNN =200 GeV

We present measurements of elliptic and triangular azimuthal anisotropy of charged particles detected at forward rapidity 1<|η|<3 in Au + Au collisions at sNN=200 GeV, as a function of centrality. The multiparticle cumulant technique is used to obtain the elliptic flow coefficients v2{2},v2{4},v2{6}, and v2{8}, and triangular flow coefficients v3{2} and v3{4}. Using the small-variance limit, we estimate the mean and variance of the event-by-event v2 distribution from v2{2} and v2{4}. In a complementary analysis, we also use a folding procedure to study the distributions of v2 and v3 directly, extracting both the mean and variance. Implications for initial geometrical fluctuations and their translation into the final-state momentum distributions are discussed

Tracking moving optima using Kalman-based predictions

The dynamic optimization problem concerns finding an optimum in a changing environment. In the field of evolutionary algorithms, this implies dealing with a timechanging fitness landscape. In this paper we compare different techniques for integrating motion information into an evolutionary algorithm, in the case it has to follow a time-changing optimum, under the assumption that the changes follow a nonrandom law. Such a law can be estimated in order to improve the optimum tracking capabilities of the algorithm. In particular, we will focus on first order dynamical laws to track moving objects. A vision-based tracking robotic application is used as testbed for experimental comparison

Visual object tracking performance measures revisited

The problem of visual tracking evaluation is sporting a large variety of performance measures, and largely suffers from lack of consensus about which measures should be used in experiments. This makes the cross-paper tracker comparison difficult. Furthermore, as some measures may be less effective than others, the tracking results may be skewed or biased towards particular tracking aspects. In this paper we revisit the popular performance measures and tracker performance visualizations and analyze them theoretically and experimentally. We show that several measures are equivalent from the point of information they provide for tracker comparison and, crucially, that some are more brittle than the others. Based on our analysis we narrow down the set of potential measures to only two complementary ones, describing accuracy and robustness, thus pushing towards homogenization of the tracker evaluation methodology. These two measures can be intuitively interpreted and visualized and have been employed by the recent Visual Object Tracking (VOT) challenges as the foundation for the evaluation methodology