Task Packing: Efficient task scheduling in unbalanced parallel programs to maximize CPU utilization

Load imbalance in parallel systems can be generated by external factors to the currently running applications like operating system noise or the underlying hardware like a heterogeneous cluster. HPC applications working on irregular data structures can also have difficulties to balance their computations across the parallel tasks. In this article we extend, improve and evaluate more deeply the Task Packing mechanism proposed in a previous work. The main idea of the mechanism is to concentrate the idle cycles of unbalanced applications in such a way that one or more CPUs are freed from execution. To achieve this, CPUs are stressed with just useful work of the parallel application tasks, provided performance is not degraded. The packing is solved by an algorithm based on the Knapsack problem, in a minimum number of CPUs and using oversubscription. We design and implement a more efficient version of such mechanism. To that end, we perform the Task Packing “in place”, taking advantage of idle cycles generated at synchronization points of unbalanced applications. Evaluations are carried out on a heterogeneous platform using FT and miniFE benchmarks. Results showed that our proposal generates low overhead. In addition the amount of freed CPUs are related to a load imbalance metric which can be used as a prediction for it.Peer ReviewedPostprint (author's final draft

Enabling Python to execute efficiently in heterogeneous distributed infrastructures with PyCOMPSs

Python has been adopted as programming language by a large number of scientific communities. Additionally to the easy programming interface, the large number of libraries and modules that have been made available by a large number of contributors, have taken this language to the top of the list of the most popular programming languages in scientific applications. However, one main drawback of Python is the lack of support for concurrency or parallelism. PyCOMPSs is a proved approach to support task-based parallelism in Python that enables applications to be executed in parallel in distributed computing platforms. This paper presents PyCOMPSs and how it has been tailored to execute tasks in heterogeneous and multi-threaded environments. We present an approach to combine the task-level parallelism provided by PyCOMPSs with the thread-level parallelism provided by MKL. Performance and behavioral results in distributed computing heterogeneous clusters show the benefits and capabilities of PyCOMPSs in both HPC and Big Data infrastructures.Thiswork has been supported by the Spanish Government (SEV2015-0493), by the Spanish Ministry of Science and Innovation (contract TIN2015-65316-P), by Generalitat de Catalunya (contracts 2014-SGR-1051 and 2014-SGR-1272). Javier Conejero postdoctoral contract is co-financed by the Ministry of Economy and Competitiveness under Juan de la Cierva Formación postdoctoral fellowship number FJCI- 2015-24651. Cristian Ramon-Cortes predoctoral contract is financed by the Ministry of Economy and Competitiveness under the contract BES-2016-076791. This work is supported by the Intel-BSC Exascale Lab. This work has been supported by the European Commission through the Horizon 2020 Research and Innovation program under contract 687584 (TANGO project).Peer ReviewedPostprint (author's final draft

Scheduling Task-parallel Applications in Dynamically Asymmetric Environments

Shared resource interference is observed by applications as dynamic performance asymmetry. Prior art has developed approaches to reduce the impact of performance asymmetry mainly at the operating system and architectural levels. In this work, we study how application-level scheduling techniques can leverage moldability (i.e. flexibility to work as either single-threaded or multithreaded task) and explicit knowledge on task criticality to handle scenarios in which system performance is not only unknown but also changing over time. Our proposed task scheduler dynamically learns the performance characteristics of the underlying platform and uses this knowledge to devise better schedules aware of dynamic performance asymmetry, hence reducing the impact of interference. Our evaluation shows that both criticality-aware scheduling and parallelism tuning are effective schemes to address interference in both shared and distributed memory applicationsComment: Published in ICPP Workshops '2

Holistic Slowdown Driven Scheduling and Resource Management for Malleable Jobs

In job scheduling, the concept of malleability has been explored since many years ago. Research shows that malleability improves system performance, but its utilization in HPC never became widespread. The causes are the difficulty in developing malleable applications, and the lack of support and integration of the different layers of the HPC software stack. However, in the last years, malleability in job scheduling is becoming more critical because of the increasing complexity of hardware and workloads. In this context, using nodes in an exclusive mode is not always the most efficient solution as in traditional HPC jobs, where applications were highly tuned for static allocations, but offering zero flexibility to dynamic executions. This paper proposes a new holistic, dynamic job scheduling policy, Slowdown Driven (SD-Policy), which exploits the malleability of applications as the key technology to reduce the average slowdown and response time of jobs. SD-Policy is based on backfill and node sharing. It applies malleability to running jobs to make room for jobs that will run with a reduced set of resources, only when the estimated slowdown improves over the static approach. We implemented SD-Policy in SLURM and evaluated it in a real production environment, and with a simulator using workloads of up to 198K jobs. Results show better resource utilization with the reduction of makespan, response time, slowdown, and energy consumption, up to respectively 7%, 50%, 70%, and 6%, for the evaluated workloads

Executing linear algebra kernels in heterogeneous distributed infrastructures with PyCOMPSs

Python is a popular programming language due to the simplicity of its syntax, while still achieving a good performance even being an interpreted language. The adoption from multiple scientific communities has evolved in the emergence of a large number of libraries and modules, which has helped to put Python on the top of the list of the programming languages [1]. Task-based programming has been proposed in the recent years as an alternative parallel programming model. PyCOMPSs follows such approach for Python, and this paper presents its extensions to combine task-based parallelism and thread-level parallelism. Also, we present how PyCOMPSs has been adapted to support heterogeneous architectures, including Xeon Phi and GPUs. Results obtained with linear algebra benchmarks demonstrate that significant performance can be obtained with a few lines of Python.This work has been supported by the Spanish Government (SEV2015-0493), by the Spanish Ministry of Science and Innovation (contract TIN2015-65316-P), by Generalitat de Catalunya (contracts 2014-SGR-1051 and 2014-SGR-1272). Javier Conejero postdoctoral contract is co-financed by the Ministry of Economy and Competitiveness under Juan de la Cierva Formación postdoctoral fellowship number FJCI-2015-24651. Cristian Ramon-Cortes predoctoral contract is financed by the Ministry of Economy and Competitiveness under the contract BES-2016-076791. This work is supported by the Intel-BSC Exascale Lab. This work has been supported by the European Commission through the Horizon 2020 Research and Innovation program under contract 687584 (TANGO project).Peer ReviewedPostprint (published version

CloudScope: diagnosing and managing performance interference in multi-tenant clouds

© 2015 IEEE.Virtual machine consolidation is attractive in cloud computing platforms for several reasons including reduced infrastructure costs, lower energy consumption and ease of management. However, the interference between co-resident workloads caused by virtualization can violate the service level objectives (SLOs) that the cloud platform guarantees. Existing solutions to minimize interference between virtual machines (VMs) are mostly based on comprehensive micro-benchmarks or online training which makes them computationally intensive. In this paper, we present CloudScope, a system for diagnosing interference for multi-tenant cloud systems in a lightweight way. CloudScope employs a discrete-time Markov Chain model for the online prediction of performance interference of co-resident VMs. It uses the results to optimally (re)assign VMs to physical machines and to optimize the hypervisor configuration, e.g. the CPU share it can use, for different workloads. We have implemented CloudScope on top of the Xen hypervisor and conducted experiments using a set of CPU, disk, and network intensive workloads and a real system (MapReduce). Our results show that CloudScope interference prediction achieves an average error of 9%. The interference-aware scheduler improves VM performance by up to 10% compared to the default scheduler. In addition, the hypervisor reconfiguration can improve network throughput by up to 30%

Methods to Improve Applicability and Efficiency of Distributed Data-Centric Compute Frameworks

The success of modern applications depends on the insights they collect from their data repositories. Data repositories for such applications currently exceed exabytes and are rapidly increasing in size, as they collect data from varied sources - web applications, mobile phones, sensors and other connected devices. Distributed storage and data-centric compute frameworks have been invented to store and analyze these large datasets. This dissertation focuses on extending the applicability and improving the efficiency of distributed data-centric compute frameworks

Efficient and elastic management of computing infrastructures

Tesis por compendio[EN] Modern data centers integrate a lot of computer and electronic devices. However, some reports state that the mean usage of a typical data center is around 50% of its peak capacity, and the mean usage of each server is between 10% and 50%. A lot of energy is destined to power on computer hardware that most of the time remains idle. Therefore, it would be possible to save energy simply by powering off those parts from the data center that are not actually used, and powering them on again as they are needed. Most data centers have computing clusters that are used for intensive computing, recently evolving towards an on-premises Cloud service model. Despite the use of low consuming components, higher energy savings can be achieved by dynamically adapting the system to the actual workload. The main approach in this case is the usage of energy saving criteria for scheduling the jobs or the virtual machines into the working nodes. The aim is to power off idle servers automatically. But it is necessary to schedule the power management of the servers in order to minimize the impact on the end users and their applications. The objective of this thesis is the elastic and efficient management of cluster infrastructures, with the aim of reducing the costs associated to idle components. This objective is addressed by automating the power management of the working nodes in a computing cluster, and also proactive stimulating the load distribution to achieve idle resources that could be powered off by means of memory overcommitment and live migration of virtual machines. Moreover, this automation is of interest for virtual clusters, as they also suffer from the same problems. While in physical clusters idle working nodes waste energy, in the case of virtual clusters that are built from virtual machines, the idle working nodes can waste money in commercial Clouds or computational resources in an on-premises Cloud.[ES] En los Centros de Procesos de Datos (CPD) existe una gran concentración de dispositivos informáticos y de equipamiento electrónico. Sin embargo, algunos estudios han mostrado que la utilización media de los CPD está en torno al 50%, y que la utilización media de los servidores se encuentra entre el 10% y el 50%. Estos datos evidencian que existe una gran cantidad de energía destinada a alimentar equipamiento ocioso, y que podríamos conseguir un ahorro energético simplemente apagando los componentes que no se estén utilizando. En muchos CPD suele haber clusters de computadores que se utilizan para computación de altas prestaciones y para la creación de Clouds privados. Si bien se ha tratado de ahorrar energía utilizando componentes de bajo consumo, también es posible conseguirlo adaptando los sistemas a la carga de trabajo en cada momento. En los últimos años han surgido trabajos que investigan la aplicación de criterios energéticos a la hora de seleccionar en qué servidor, de entre los que forman un cluster, se debe ejecutar un trabajo o alojar una máquina virtual. En muchos casos se trata de conseguir equipos ociosos que puedan ser apagados, pero habitualmente se asume que dicho apagado se hace de forma automática, y que los equipos se encienden de nuevo cuando son necesarios. Sin embargo, es necesario hacer una planificación de encendido y apagado de máquinas para minimizar el impacto en el usuario final. En esta tesis nos planteamos la gestión elástica y eficiente de infrastructuras de cálculo tipo cluster, con el objetivo de reducir los costes asociados a los componentes ociosos. Para abordar este problema nos planteamos la automatización del encendido y apagado de máquinas en los clusters, así como la aplicación de técnicas de migración en vivo y de sobreaprovisionamiento de memoria para estimular la obtención de equipos ociosos que puedan ser apagados. Además, esta automatización es de interés para los clusters virtuales, puesto que también sufren el problema de los componentes ociosos, sólo que en este caso están compuestos por, en lugar de equipos físicos que gastan energía, por máquinas virtuales que gastan dinero en un proveedor Cloud comercial o recursos en un Cloud privado.[CA] En els Centres de Processament de Dades (CPD) hi ha una gran concentració de dispositius informàtics i d'equipament electrònic. No obstant això, alguns estudis han mostrat que la utilització mitjana dels CPD està entorn del 50%, i que la utilització mitjana dels servidors es troba entre el 10% i el 50%. Estes dades evidencien que hi ha una gran quantitat d'energia destinada a alimentar equipament ociós, i que podríem aconseguir un estalvi energètic simplement apagant els components que no s'estiguen utilitzant. En molts CPD sol haver-hi clusters de computadors que s'utilitzen per a computació d'altes prestacions i per a la creació de Clouds privats. Si bé s'ha tractat d'estalviar energia utilitzant components de baix consum, també és possible aconseguir-ho adaptant els sistemes a la càrrega de treball en cada moment. En els últims anys han sorgit treballs que investiguen l'aplicació de criteris energètics a l'hora de seleccionar en quin servidor, d'entre els que formen un cluster, s'ha d'executar un treball o allotjar una màquina virtual. En molts casos es tracta d'aconseguir equips ociosos que puguen ser apagats, però habitualment s'assumix que l'apagat es fa de forma automàtica, i que els equips s'encenen novament quan són necessaris. No obstant això, és necessari fer una planificació d'encesa i apagat de màquines per a minimitzar l'impacte en l'usuari final. En esta tesi ens plantegem la gestió elàstica i eficient d'infrastructuras de càlcul tipus cluster, amb l'objectiu de reduir els costos associats als components ociosos. Per a abordar este problema ens plantegem l'automatització de l'encesa i apagat de màquines en els clusters, així com l'aplicació de tècniques de migració en viu i de sobreaprovisionament de memòria per a estimular l'obtenció d'equips ociosos que puguen ser apagats. A més, esta automatització és d'interés per als clusters virtuals, ja que també patixen el problema dels components ociosos, encara que en este cas estan compostos per, en compte d'equips físics que gasten energia, per màquines virtuals que gasten diners en un proveïdor Cloud comercial o recursos en un Cloud privat.Alfonso Laguna, CD. (2015). Efficient and elastic management of computing infrastructures [Tesis doctoral no publicada]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/57187Compendi

Impact of the Scheduling Strategy in Heterogeneous Systems That Provide Co-Scheduling

ABSTRACT In recent years, the number of processing units per compute node has been increasing. In order to utilize all or most of the available resources of a high-performance computing cluster, at least some of its nodes will have to be shared by several applications at the same time. Yet, even if jobs are co-scheduled on a node, it can happen that high performance resources remain idle, although there are jobs that could make use of them (e. g. if the resource was temporarily blocked when the job was started). Heterogeneous schedulers, which schedule tasks for different devices, can bind jobs to resources in a way that can significantly reduce the idle time. Typically, those schedulers make their decisions based on a static strategy. In this paper, we investigate the impact if a heterogeneous scheduler allows modifications of the strategies at runtime. For a set of applications, we determine the makespan and show how it is influenced by four different scheduling strategies. A well-chosen strategy can result in a speedup of more the 2.5 in comparison to other strategies