Reviewing the problem of learning non-taxonomic relationships of ontologies from text

Learning Non-Taxonomic Relationships is a sub-field of Ontology Learning that aims at automating the extraction of these relationships from text. This article discusses the problem of Learning Non-Taxonomic Relationships of ontologies and proposes a generic process for approaching it. Some techniques representing the state of the art of this field are discussed along with their advantages and limitations. Finally, a framework for Learning Non- Taxonomic Relationships being developed by the authors is briefly discussed. This framework intends to be a customizable solution to reach good effectiveness in the process of extraction of non-taxonomic relationships according to the characteristics of the corpus.This work is supported by CNPq, CAPES and FAPEMA, research funding agencies of the Brazilian government

Constructive Ontology Engineering

The proliferation of the Semantic Web depends on ontologies for knowledge sharing, semantic annotation, data fusion, and descriptions of data for machine interpretation. However, ontologies are difficult to create and maintain. In addition, their structure and content may vary depending on the application and domain. Several methods described in literature have been used in creating ontologies from various data sources such as structured data in databases or unstructured text found in text documents or HTML documents. Various data mining techniques, natural language processing methods, syntactical analysis, machine learning methods, and other techniques have been used in building ontologies with automated and semi-automated processes. Due to the vast amount of unstructured text and its continued proliferation, the problem of constructing ontologies from text has attracted considerable attention for research. However, the constructed ontologies may be noisy, with missing and incorrect knowledge. Thus ontology construction continues to be a challenging research problem. The goal of this research is to investigate a new method for guiding a process of extracting and assembling candidate terms into domain specific concepts and relationships. The process is part of an overall semi automated system for creating ontologies from unstructured text sources and is driven by the user’s goals in an incremental process. The system applies natural language processing techniques and uses a series of syntactical analysis tools for extracting grammatical relations from a list of text terms representing the parts of speech of a sentence. The extraction process focuses on evaluating the subject predicate-object sequences of the text for potential concept-relation-concept triples to be built into an ontology. Users can guide the system by selecting seedling concept-relation-concept triples to assist building concepts from the extracted domain specific terms. As a result, the ontology building process develops into an incremental one that allows the user to interact with the system, to guide the development of an ontology, and to tailor the ontology for the user’s application needs. The main contribution of this work is the implementation and evaluation of a new semi- automated methodology for constructing domain specific ontologies from unstructured text corpus

Evaluating techniques for learning non-taxonomic relationships of ontologies from text

"Manuscript"Learning Non-Taxonomic Relationships is a sub-field of Ontology Learning that aims at automating the extraction of these relationships from text. Several techniques have been proposed based on Natural Language Processing and Machine Learning. However just like for other techniques for Ontology Learning, evaluating techniques for Learning Non-Taxonomic Relationships is an open problem. Three general proposals suggest that the learned ontologies can be evaluated in an executable application or by domain experts or even by a comparison with a predefined reference ontology. This article proposes two procedures to evaluate techniques for Learning Non-Taxonomic Relationships based on the comparison of the relationships obtained with those of a reference ontology. Also, these procedures are used in the evaluation of two state of the art techniques performing the extraction of relationships from two corpora in the domains of biology and Family Law.This work is supported by CNPq, CAPES and FAPEMA, research funding agencies of the Brazilian government

Behavior change interventions: the potential of ontologies for advancing science and practice

A central goal of behavioral medicine is the creation of evidence-based interventions for promoting behavior change. Scientific knowledge about behavior change could be more effectively accumulated using "ontologies." In information science, an ontology is a systematic method for articulating a "controlled vocabulary" of agreed-upon terms and their inter-relationships. It involves three core elements: (1) a controlled vocabulary specifying and defining existing classes; (2) specification of the inter-relationships between classes; and (3) codification in a computer-readable format to enable knowledge generation, organization, reuse, integration, and analysis. This paper introduces ontologies, provides a review of current efforts to create ontologies related to behavior change interventions and suggests future work. This paper was written by behavioral medicine and information science experts and was developed in partnership between the Society of Behavioral Medicine's Technology Special Interest Group (SIG) and the Theories and Techniques of Behavior Change Interventions SIG. In recent years significant progress has been made in the foundational work needed to develop ontologies of behavior change. Ontologies of behavior change could facilitate a transformation of behavioral science from a field in which data from different experiments are siloed into one in which data across experiments could be compared and/or integrated. This could facilitate new approaches to hypothesis generation and knowledge discovery in behavioral science

Ontology learning for Semantic Web Services

This thesis was submitted for the degree of Doctor of Philosophy and awarded by Brunel University, 18/10/2010.The expansion of Semantic Web Services is restricted by traditional ontology engineering methods. Manual ontology development is time consuming, expensive and a resource exhaustive task. Consequently, it is important to support ontology engineers by automating the ontology acquisition process to help deliver the Semantic Web vision. Existing Web Services offer an affluent source of domain knowledge for ontology engineers. Ontology learning can be seen as a plug-in in the Web Service ontology development process, which can be used by ontology engineers to develop and maintain an ontology that evolves with current Web Services. Supporting the domain engineer with an automated tool whilst building an ontological domain model, serves the purpose of reducing time and effort in acquiring the domain concepts and relations from Web Service artefacts, whilst effectively speeding up the adoption of Semantic Web Services, thereby allowing current Web Services to accomplish their full potential. With that in mind, a Service Ontology Learning Framework (SOLF) is developed and applied to a real set of Web Services. The research contributes a rigorous method that effectively extracts domain concepts, and relations between these concepts, from Web Services and automatically builds the domain ontology. The method applies pattern-based information extraction techniques to automatically learn domain concepts and relations between those concepts. The framework is automated via building a tool that implements the techniques. Applying the SOLF and the tool on different sets of services results in an automatically built domain ontology model that represents semantic knowledge in the underlying domain. The framework effectiveness, in extracting domain concepts and relations, is evaluated by its appliance on varying sets of commercial Web Services including the financial domain. The standard evaluation metrics, precision and recall, are employed to determine both the accuracy and coverage of the learned ontology models. Both the lexical and structural dimensions of the models are evaluated thoroughly. The evaluation results are encouraging, providing concrete outcomes in an area that is little researched

Semantic web technology to support learning about the semantic web

This paper describes ASPL, an Advanced Semantic Platform for Learning, designed using the Magpie framework with an aim to support students learning about the Semantic Web research area. We describe the evolution of ASPL and illustrate how we used the results from a formal evaluation of the initial system to re-design the user functionalities. The second version of ASPL semantically interprets the results provided by a non-semantic web mining tool and uses them to support various forms of semantics-assisted exploration, based on pedagogical strategies such as performing later reasoning steps and problem space filtering

Human-Intelligence and Machine-Intelligence Decision Governance Formal Ontology

Since the beginning of the human race, decision making and rational thinking played a pivotal role for mankind to either exist and succeed or fail and become extinct. Self-awareness, cognitive thinking, creativity, and emotional magnitude allowed us to advance civilization and to take further steps toward achieving previously unreachable goals. From the invention of wheels to rockets and telegraph to satellite, all technological ventures went through many upgrades and updates. Recently, increasing computer CPU power and memory capacity contributed to smarter and faster computing appliances that, in turn, have accelerated the integration into and use of artificial intelligence (AI) in organizational processes and everyday life. Artificial intelligence can now be found in a wide range of organizational systems including healthcare and medical diagnosis, automated stock trading, robotic production, telecommunications, space explorations, and homeland security. Self-driving cars and drones are just the latest extensions of AI. This thrust of AI into organizations and daily life rests on the AI community’s unstated assumption of its ability to completely replicate human learning and intelligence in AI. Unfortunately, even today the AI community is not close to completely coding and emulating human intelligence into machines. Despite the revolution of digital and technology in the applications level, there has been little to no research in addressing the question of decision making governance in human-intelligent and machine-intelligent (HI-MI) systems. There also exists no foundational, core reference, or domain ontologies for HI-MI decision governance systems. Further, in absence of an expert reference base or body of knowledge (BoK) integrated with an ontological framework, decision makers must rely on best practices or standards that differ from organization to organization and government to government, contributing to systems failure in complex mission critical situations. It is still debatable whether and when human or machine decision capacity should govern or when a joint human-intelligence and machine-intelligence (HI-MI) decision capacity is required in any given decision situation. To address this deficiency, this research establishes a formal, top level foundational ontology of HI-MI decision governance in parallel with a grounded theory based body of knowledge which forms the theoretical foundation of a systemic HI-MI decision governance framework

Semi-automated Ontology Generation for Biocuration and Semantic Search

Background: In the life sciences, the amount of literature and experimental data grows at a tremendous rate. In order to effectively access and integrate these data, biomedical ontologies – controlled, hierarchical vocabularies – are being developed. Creating and maintaining such ontologies is a difficult, labour-intensive, manual process. Many computational methods which can support ontology construction have been proposed in the past. However, good, validated systems are largely missing. Motivation: The biocuration community plays a central role in the development of ontologies. Any method that can support their efforts has the potential to have a huge impact in the life sciences. Recently, a number of semantic search engines were created that make use of biomedical ontologies for document retrieval. To transfer the technology to other knowledge domains, suitable ontologies need to be created. One area where ontologies may prove particularly useful is the search for alternative methods to animal testing, an area where comprehensive search is of special interest to determine the availability or unavailability of alternative methods. Results: The Dresden Ontology Generator for Directed Acyclic Graphs (DOG4DAG) developed in this thesis is a system which supports the creation and extension of ontologies by semi-automatically generating terms, definitions, and parent-child relations from text in PubMed, the web, and PDF repositories. The system is seamlessly integrated into OBO-Edit and Protégé, two widely used ontology editors in the life sciences. DOG4DAG generates terms by identifying statistically significant noun-phrases in text. For definitions and parent-child relations it employs pattern-based web searches. Each generation step has been systematically evaluated using manually validated benchmarks. The term generation leads to high quality terms also found in manually created ontologies. Definitions can be retrieved for up to 78% of terms, child ancestor relations for up to 54%. No other validated system exists that achieves comparable results. To improve the search for information on alternative methods to animal testing an ontology has been developed that contains 17,151 terms of which 10% were newly created and 90% were re-used from existing resources. This ontology is the core of Go3R, the first semantic search engine in this field. When a user performs a search query with Go3R, the search engine expands this request using the structure and terminology of the ontology. The machine classification employed in Go3R is capable of distinguishing documents related to alternative methods from those which are not with an F-measure of 90% on a manual benchmark. Approximately 200,000 of the 19 million documents listed in PubMed were identified as relevant, either because a specific term was contained or due to the automatic classification. The Go3R search engine is available on-line under www.Go3R.org

Computational acquisition of knowledge in small-data environments: a case study in the field of energetics

The UK’s defence industry is accelerating its implementation of artificial intelligence, including expert systems and natural language processing (NLP) tools designed to supplement human analysis. This thesis examines the limitations of NLP tools in small-data environments (common in defence) in the defence-related energetic-materials domain. A literature review identifies the domain-specific challenges of developing an expert system (specifically an ontology). The absence of domain resources such as labelled datasets and, most significantly, the preprocessing of text resources are identified as challenges. To address the latter, a novel general-purpose preprocessing pipeline specifically tailored for the energetic-materials domain is developed. The effectiveness of the pipeline is evaluated. Examination of the interface between using NLP tools in data-limited environments to either supplement or replace human analysis completely is conducted in a study examining the subjective concept of importance. A methodology for directly comparing the ability of NLP tools and experts to identify important points in the text is presented. Results show the participants of the study exhibit little agreement, even on which points in the text are important. The NLP, expert (author of the text being examined) and participants only agree on general statements. However, as a group, the participants agreed with the expert. In data-limited environments, the extractive-summarisation tools examined cannot effectively identify the important points in a technical document akin to an expert. A methodology for the classification of journal articles by the technology readiness level (TRL) of the described technologies in a data-limited environment is proposed. Techniques to overcome challenges with using real-world data such as class imbalances are investigated. A methodology to evaluate the reliability of human annotations is presented. Analysis identifies a lack of agreement and consistency in the expert evaluation of document TRL.Open Acces

Knowledge society arguments revisited in the semantic technologies era

In the light of high profile governmental and international efforts to realise the knowledge society, I review the arguments made for and against it from a technology standpoint. I focus on advanced knowledge technologies with applications on a large scale and in open- ended environments like the World Wide Web and its ambitious extension, the Semantic Web. I argue for a greater role of social networks in a knowledge society and I explore the recent developments in mechanised trust, knowledge certification, and speculate on their blending with traditional societal institutions. These form the basis of a sketched roadmap for enabling technologies for a knowledge society