Performance of SW-ARQ in bacterial quorum communications

Bacteria communicate with one another by exchanging specific chemical signals called autoinducers. This process, also called quorum sensing, enables a cluster of bacteria to regulate their gene expression and behaviour collectively and synchronously, such as bioluminescence, virulence, sporulation and conjugation. Bacteria assess their population density by detecting the concentration of autoinducers. In Vibrio fischeri, which is a heterotrophic Gram-negative marine bacterium, quorum sensing relies on the synthesis, accumulation and subsequent sensing of a signalling molecule (3-oxo-C6-HSL, an N-acyl homoserine lactone or AHL). In this work, a data link layer protocol for a bacterial communication paradigm based on diffusion is introduced, considering two populations of bacteria as the transmitter node and the receiver node, instead of employing two individual bacteria. Moreover, some initial results are provided, which concern the application of the Stop-N-Wait Automatic Repeat reQuest (SW-ARQ) schemes to the proposed model. The performances of the system are later evaluated, in terms of the transmission time, frame error rate, energy consumption and transmission efficiency

Analysis of an Adaptive Modulation and Coding scheme with HARQ for TCP traffic

In this paper, we analyze the aggregate TCP throughput performance of a wireless link utilizing Active Queue Management (AQM) and an Adaptive Modulation and Coding (AMC) scheme with Hybrid ARQ (HARQ) based on the probability of failure in the first transmission attempt. We assume packets arriving out-of-order at the wireless receiver due to random retransmissions are resequenced before being released to the network. For this reason, an approximate model for the delay experienced at the resequencing buffer is also presented. In the light of the results obtained from the presented analysis, we propose a threshold for the aforementioned probability of failure making the investigated AMC scheme work at an overall performance close to that of the optimum policy. © 2015 IEEE

Analysis of ARQ protocols for bacterial quorum communications

Quorum sensing (QS) is used to describe the communication between bacterial cells, whereby a coordinated population response is controlled through the synthesis, accumulation and subsequent sensing of specific diffusible chemical signals called autoinducers, enabling a cluster of bacteria to regulate gene expression and behaviour collectively and synchronously, and assess their own population. As a promising method of molecular communication, bacterial populations can be programmed as bio-transceivers to establish information transmission using molecules. In this work, to investigate the key features for molecular communication, a bacterial QS system is introduced, which contains two clusters of bacteria, specifically Vibrio fischeri, as the transmitter node and receiver node, and the diffusive channel. The transmitted information is represented by the concentration of autoinducers with on–off keying (OOK) modulation. In addition, to achieve better reliability, transmission efficiency and channel throughput performance, different Automatic Repeat reQuest (ARQ) protocols are taken into consideration. This configuration is investigated via simulation and the consequent results discussed. The performance of the system is evaluated in terms of transmission time, efficiency, bit error rate (BER) and channel throughput. Results show that Selective-Repeat (SR-ARQ) performs better than Go-Back-N (GBN-ARQ), while the performance of Stop-N-Wait (SW-ARQ) varies for different channel conditions, which is quite different from the performance of ARQ schemes in traditional networking areas

Analytical Modelling of Scheduling Schemes under Self-similar Network Traffic. Traffic Modelling and Performance Analysis of Centralized and Distributed Scheduling Schemes.

High-speed transmission over contemporary communication networks has drawn many research efforts. Traffic scheduling schemes which play a critical role in managing network transmission have been pervasively studied and widely implemented in various practical communication networks. In a sophisticated communication system, a variety of applications co-exist and require differentiated Quality-of-Service (QoS). Innovative scheduling schemes and hybrid scheduling disciplines which integrate multiple traditional scheduling mechanisms have emerged for QoS differentiation. This study aims to develop novel analytical models for commonly interested scheduling schemes in communication systems under more realistic network traffic and use the models to investigate the issues of design and development of traffic scheduling schemes. In the open literature, it is commonly recognized that network traffic exhibits self-similar nature, which has serious impact on the performance of communication networks and protocols. To have a deep study of self-similar traffic, the real-world traffic datasets are measured and evaluated in this study. The results reveal that selfsimilar traffic is a ubiquitous phenomenon in high-speed communication networks and highlight the importance of the developed analytical models under self-similar traffic. The original analytical models are then developed for the centralized scheduling schemes including the Deficit Round Robin, the hybrid PQGPS which integrates the traditional Priority Queueing (PQ) and Generalized Processor Sharing (GPS) schemes, and the Automatic Repeat reQuest (ARQ) forward error control discipline in the presence of self-similar traffic. Most recently, research on the innovative Cognitive Radio (CR) techniques in wireless networks is popular. However, most of the existing analytical models still employ the traditional Poisson traffic to examine the performance of CR involved systems. In addition, few studies have been reported for estimating the residual service left by primary users. Instead, extensive existing studies use an ON/OFF source to model the residual service regardless of the primary traffic. In this thesis, a PQ theory is adopted to investigate and model the possible service left by selfsimilar primary traffic and derive the queue length distribution of individual secondary users under the distributed spectrum random access protocol

Error control in bacterial quorum communications

Quorum sensing (QS) is used to describe the communication between bacterial cells, whereby a coordinated population response is controlled through the synthesis, accumulation and subsequent sensing of specific diffusible chemical signals called autoinducers, enabling a cluster of bacteria to regulate gene expression and behavior collectively and synchronously, and assess their own population. As a promising method of molecular communication (MC), bacterial populations can be programmed as bio-transceivers to establish information transmission using molecules. In this work, to investigate the key features for MC, a bacterial QS system is introduced, which contains two clusters of bacteria, specifically Vibrio fischeri, as the transmitter node and receiver node, and the diffusive channel. The transmitted information is represented by the concentration of autoinducers with on-off keying (OOK) modulation. In addition, to achieve better reliability and energy efficiency, different error control techniques, including forward error correction (FEC) and Automatic Repeat reQuest (ARQ) are taken into consideration. For FEC, this work presents a comparison of the performance of traditional Hamming codes, Minimum Energy Codes (MEC) and Luby Transform (LT) codes over the channel. In addition, it applied several ARQ protocols, namely Stop-N-Wait (SW-ARQ), Go-Back-N (GBN-ARQ), and Selective-Repeat (SR-ARQ) combined with error detection codes to achieve better reliability. Results show that both the FEC and ARQ techniques can enhance the channel reliability, and that ARQ can resolve the issue of out-of-sequence and duplicate packet delivery. Moreover, this work further addresses the question of optimal frame size for data communication in this channel capacity and energy constrained bacterial quorum communication system. A novel energy model which is constructed using the experimental validated synthetic logic gates has been proposed to help with the optimization process. The optimal fixed frame length is determined for a set of channel parameters by maximizing the throughput and energy efficiency matrix