12,533 research outputs found
Blur resolved OCT: full-range interferometric synthetic aperture microscopy through dispersion encoding
We present a computational method for full-range interferometric synthetic
aperture microscopy (ISAM) under dispersion encoding. With this, one can
effectively double the depth range of optical coherence tomography (OCT),
whilst dramatically enhancing the spatial resolution away from the focal plane.
To this end, we propose a model-based iterative reconstruction (MBIR) method,
where ISAM is directly considered in an optimization approach, and we make the
discovery that sparsity promoting regularization effectively recovers the
full-range signal. Within this work, we adopt an optimal nonuniform discrete
fast Fourier transform (NUFFT) implementation of ISAM, which is both fast and
numerically stable throughout iterations. We validate our method with several
complex samples, scanned with a commercial SD-OCT system with no hardware
modification. With this, we both demonstrate full-range ISAM imaging, and
significantly outperform combinations of existing methods.Comment: 17 pages, 7 figures. The images have been compressed for arxiv -
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Single-shot compressed ultrafast photography: a review
Compressed ultrafast photography (CUP) is a burgeoning single-shot computational imaging technique that provides an imaging speed as high as 10 trillion frames per second and a sequence depth of up to a few hundred frames. This technique synergizes compressed sensing and the streak camera technique to capture nonrepeatable ultrafast transient events with a single shot. With recent unprecedented technical developments and extensions of this methodology, it has been widely used in ultrafast optical imaging and metrology, ultrafast electron diffraction and microscopy, and information security protection. We review the basic principles of CUP, its recent advances in data acquisition and image reconstruction, its fusions with other modalities, and its unique applications in multiple research fields
Linear chemically sensitive electron tomography using DualEELS and dictionary-based compressed sensing
We have investigated the use of DualEELS in elementally sensitive tilt series tomography in the scanning transmission electron microscope. A procedure is implemented using deconvolution to remove the effects of multiple scattering, followed by normalisation by the zero loss peak intensity. This is performed to produce a signal that is linearly dependent on the projected density of the element in each pixel. This method is compared with one that does not include deconvolution (although normalisation by the zero loss peak intensity is still performed). Additionaly, we compare the 3D reconstruction using a new compressed sensing algorithm, DLET, with the well-established SIRT algorithm. VC precipitates, which are extracted from a steel on a carbon replica, are used in this study. It is found that the use of this linear signal results in a very even density throughout the precipitates. However, when deconvolution is omitted, a slight density reduction is observed in the cores of the precipitates (a so-called cupping artefact). Additionally, it is clearly demonstrated that the 3D morphology is much better reproduced using the DLET algorithm, with very little elongation in the missing wedge direction. It is therefore concluded that reliable elementally sensitive tilt tomography using EELS requires the appropriate use of DualEELS together with a suitable reconstruction algorithm, such as the compressed sensing based reconstruction algorithm used here, to make the best use of the limited data volume and signal to noise inherent in core-loss EELS
Proceedings of the second "international Traveling Workshop on Interactions between Sparse models and Technology" (iTWIST'14)
The implicit objective of the biennial "international - Traveling Workshop on
Interactions between Sparse models and Technology" (iTWIST) is to foster
collaboration between international scientific teams by disseminating ideas
through both specific oral/poster presentations and free discussions. For its
second edition, the iTWIST workshop took place in the medieval and picturesque
town of Namur in Belgium, from Wednesday August 27th till Friday August 29th,
2014. The workshop was conveniently located in "The Arsenal" building within
walking distance of both hotels and town center. iTWIST'14 has gathered about
70 international participants and has featured 9 invited talks, 10 oral
presentations, and 14 posters on the following themes, all related to the
theory, application and generalization of the "sparsity paradigm":
Sparsity-driven data sensing and processing; Union of low dimensional
subspaces; Beyond linear and convex inverse problem; Matrix/manifold/graph
sensing/processing; Blind inverse problems and dictionary learning; Sparsity
and computational neuroscience; Information theory, geometry and randomness;
Complexity/accuracy tradeoffs in numerical methods; Sparsity? What's next?;
Sparse machine learning and inference.Comment: 69 pages, 24 extended abstracts, iTWIST'14 website:
http://sites.google.com/site/itwist1
Encrypted Three-dimensional Dynamic Imaging using Snapshot Time-of-flight Compressed Ultrafast Photography
Compressed ultrafast photography (CUP), a computational imaging technique, is synchronized with short-pulsed laser illumination to enable dynamic three-dimensional (3D) imaging. By leveraging the time-of-flight (ToF) information of pulsed light backscattered by the object, ToF-CUP can reconstruct a volumetric image from a single camera snapshot. In addition, the approach unites the encryption of depth data with the compressed acquisition of 3D data in a single snapshot measurement, thereby allowing efficient and secure data storage and transmission. We demonstrated high-speed 3D videography of moving objects at up to 75 volumes per second. The ToF-CUP camera was applied to track the 3D position of a live comet goldfish. We have also imaged a moving object obscured by a scattering medium
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Statistical Region Based Segmentation of Ultrasound Images
Segmentation of ultrasound images is a challenging problem due to speckle, which
corrupts the image and can result in weak or missing image boundaries, poor signal to
noise ratio, and diminished contrast resolution. Speckle is a random interference pattern
that is characterized by an asymmetric distribution as well as significant spatial correla-
tion. These attributes of speckle are challenging to model in a segmentation approach, so
many previous ultrasound segmentation methods simplify the problem by assuming that
the speckle is white and/or Gaussian distributed. Unlike these methods, in this paper
we present an ultrasound-specific segmentation approach that addresses both the spatial
correlation of the data as well as its intensity distribution. We first decorrelate the image
and then apply a region-based active contour whose motion is derived from an appropri-
ate parametric distribution for maximum likelihood image segmentation. We consider
zero-mean complex Gaussian, Rayleigh, and Fisher-Tippett flows, which are designed
to model fully formed speckle in the in-phase/quadrature (IQ), envelope detected, and
display (log compressed) images, respectively. We present experimental results demon-
strating the effectiveness of our method, and compare the results to other parametric
and non-parametric active contours
Single-image Tomography: 3D Volumes from 2D Cranial X-Rays
As many different 3D volumes could produce the same 2D x-ray image, inverting
this process is challenging. We show that recent deep learning-based
convolutional neural networks can solve this task. As the main challenge in
learning is the sheer amount of data created when extending the 2D image into a
3D volume, we suggest firstly to learn a coarse, fixed-resolution volume which
is then fused in a second step with the input x-ray into a high-resolution
volume. To train and validate our approach we introduce a new dataset that
comprises of close to half a million computer-simulated 2D x-ray images of 3D
volumes scanned from 175 mammalian species. Applications of our approach
include stereoscopic rendering of legacy x-ray images, re-rendering of x-rays
including changes of illumination, view pose or geometry. Our evaluation
includes comparison to previous tomography work, previous learning methods
using our data, a user study and application to a set of real x-rays
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