Attention Allocation Aid for Visual Search

This paper outlines the development and testing of a novel, feedback-enabled attention allocation aid (AAAD), which uses real-time physiological data to improve human performance in a realistic sequential visual search task. Indeed, by optimizing over search duration, the aid improves efficiency, while preserving decision accuracy, as the operator identifies and classifies targets within simulated aerial imagery. Specifically, using experimental eye-tracking data and measurements about target detectability across the human visual field, we develop functional models of detection accuracy as a function of search time, number of eye movements, scan path, and image clutter. These models are then used by the AAAD in conjunction with real time eye position data to make probabilistic estimations of attained search accuracy and to recommend that the observer either move on to the next image or continue exploring the present image. An experimental evaluation in a scenario motivated from human supervisory control in surveillance missions confirms the benefits of the AAAD.Comment: To be presented at the ACM CHI conference in Denver, Colorado in May 201

A text mining framework for Big Data

Text Mining is the ability to generate knowledge (insight) from text. This is a challenging task, especially when the target text databases are very large. Big Data has attracted much attention lately, both from academia and industry. A number of distributed databases, search engines and frameworks have been developed to handle the memory and time constraints, which are required to process a large amount of data. However, there is no open-source end-to-end framework that can combinenearreal-timeandbatchprocessingofingestedbigtextualdataalongwith user-defined options and provision of specific, reliable insight from the data. This is important as this way new unstructured information is made accessible in near real-time, more personalised customer products can be created and novel unusual patterns can be found and actioned on quickly. This work focuses on a proprietary complete near real-time automated classification framework for unstructured data with the use of Natural Language Processing and Machine Learning algorithms on Apache Spark. The evaluation of our framework shows that it achieves a comparable accuracy with respect to some of the best approaches presented in the literature

Towards an Efficient, Scalable Stream Query Operator Framework for Representing and Analyzing Continuous Fields

Advancements in sensor technology have made it less expensive to deploy massive numbers of sensors to observe continuous geographic phenomena at high sample rates and stream live sensor observations. This fact has raised new challenges since sensor streams have pushed the limits of traditional geo-sensor data management technology. Data Stream Engines (DSEs) provide facilities for near real-time processing of streams, however, algorithms supporting representing and analyzing Spatio-Temporal (ST) phenomena are limited. This dissertation investigates near real-time representation and analysis of continuous ST phenomena, observed by large numbers of mobile, asynchronously sampling sensors, using a DSE and proposes two novel stream query operator frameworks. First, the ST Interpolation Stream Query Operator Framework (STI-SQO framework) continuously transforms sensor streams into rasters using a novel set of stream query operators that perform ST-IDW interpolation. A key component of the STI-SQO framework is the 3D, main memory-based, ST Grid Index that enables high performance ST insertion and deletion of massive numbers of sensor observations through Isotropic Time Cell and Time Block-based partitioning. The ST Grid Index facilitates fast ST search for samples using ST shell-based neighborhood search templates, namely the Cylindrical Shell Template and Nested Shell Template. Furthermore, the framework contains the stream-based ST-IDW algorithms ST Shell and ST ak-Shell for high performance, parallel grid cell interpolation. Secondly, the proposed ST Predicate Stream Query Operator Framework (STP-SQO framework) efficiently evaluates value predicates over ST streams of ST continuous phenomena. The framework contains several stream-based predicate evaluation algorithms, including Region-Growing, Tile-based, and Phenomenon-Aware algorithms, that target predicate evaluation to regions with seed points and minimize the number of raster cells that are interpolated when evaluating value predicates. The performance of the proposed frameworks was assessed with regard to prediction accuracy of output results and runtime. The STI-SQO framework achieved a processing throughput of 250,000 observations in 2.5 s with a Normalized Root Mean Square Error under 0.19 using a 500×500 grid. The STP-SQO framework processed over 250,000 observations in under 0.25 s for predicate results covering less than 40% of the observation area, and the Scan Line Region Growing algorithm was consistently the fastest algorithm tested

RTPrimerDB: the real-time PCR primer and probe database, major update 2006

The RTPrimerDB () project provides a freely accessible data retrieval system and an in silico assay evaluation pipeline for real-time quantitative PCR assays. Over the last year the number of user submitted assays has grown to 3500. Data conveyance from Entrez Gene by establishing an assay-to-gene relationship enables the addition of new primer assays for one of the 1.5 million different genes from 2300 species stored in the system. Easy access to the primer and probe data is possible by using multiple search criteria. Assay reports contain gene information, assay details (such as oligonucleotide sequences, detection chemistry and reaction conditions), publication information, users' experimental evaluation feedback and submitter's contact details. Gene expression assays are extended with a scalable assay viewer that provides detailed information on the alignment of primer and probe sequences on the known transcript variants of a gene, along with Single Nucleotide Polymorphisms (SNP) positions and peptide domain information. Furthermore, an mfold module is implemented to predict the secondary structure of the amplicon sequence, as this has been reported to impact the efficiency of the PCR. RTPrimerDB is also extended with an in silico analysis pipeline to streamline the evaluation of custom designed primer and probe sequences prior to ordering and experimental evaluation. In a secured environment, the pipeline performs automated BLAST specificity searches, mfold secondary structure prediction, SNP or plain sequence error identification, and graphical visualization of the aligned primer and probe sequences on the target gene

Locality-aware scientific workflow engine for fast-evolving spatiotemporal sensor data, A

2017 Spring.Includes bibliographical references.Discerning knowledge from voluminous data involves a series of data manipulation steps. Scientists typically compose and execute workflows for these steps using scientific workflow management systems (SWfMSs). SWfMSs have been developed for several research communities including but not limited to bioinformatics, biology, astronomy, computational science, and physics. Parallel execution of workflows has been widely employed in SWfMSs by exploiting the storage and computing resources of grid and cloud services. However, none of these systems have been tailored for the needs of spatiotemporal analytics on real-time sensor data with high arrival rates. This thesis demonstrates the development and evaluation of a target-oriented workflow model that enables a user to specify dependencies among the workflow components, including data availability. The underlying spatiotemporal data dispersion and indexing scheme provides fast data search and retrieval to plan and execute computations comprising the workflow. This work includes a scheduling algorithm that targets minimizing data movement across machines while ensuring fair and efficient resource allocation among multiple users. The study includes empirical evaluations performed on the Google cloud