Impact of a complex food microbiota on energy metabolism in the model organism Caenorhabditis elegans

The nematode Caenorhabditis elegans is widely used as a model system for research on aging, development, and host-pathogen interactions. Little is currently known about the mechanisms underlying the effects exerted by foodborne microbes. We took advantage of C. elegans to evaluate the impact of foodborne microbiota on well characterized physiological features of the worms. Foodborne lactic acid bacteria (LAB) consortium was used to feed nematodes and its composition was evaluated by 16S rDNA analysis and strain typing before and after colonization of the nematode gut. Lactobacillus delbrueckii, L. fermentum, and Leuconostoc lactis were identified as the main species and shown to display different worm gut colonization capacities. LAB supplementation appeared to decrease nematode lifespan compared to the animals fed with the conventional Escherichia coli nutrient source or a probiotic bacterial strain. Reduced brood size was also observed in microbiota-fed nematodes. Moreover, massive accumulation of lipid droplets was revealed by BODIPY staining. Altered expression of nhr-49, pept-1, and tub-1 genes, associated with obesity phenotypes, was demonstrated by RT-qPCR. Since several pathways are evolutionarily conserved in C. elegans, our results highlight the nematode as a valuable model system to investigate the effects of a complex microbial consortium on host energy metabolism

Spartan Daily, February 25, 1981

Volume 76, Issue 21https://scholarworks.sjsu.edu/spartandaily/6725/thumbnail.jp

Spartan Daily, October 11, 1983

Volume 81, Issue 30https://scholarworks.sjsu.edu/spartandaily/7079/thumbnail.jp

In vitro and in vivo selection of potentially probiotic lactobacilli from Nocellara del Belice table olives

Table olives are increasingly recognized as a vehicle as well as a source of probiotic bacteria, especially those fermented with traditional procedures based on the activity of indigenous microbial consortia, originating from local environments. In the present study, we report characterization at the species level of 49 Lactic Acid Bacteria (LAB) strains deriving from Nocellara del Belice table olives fermented with the Spanish or Castelvetrano methods, recently isolated in our previous work. Ribosomal 16S DNA analysis allowed identification of 4 Enterococcus gallinarum, 3 E. casseliflavus, 14 Leuconostoc mesenteroides, 19 Lactobacillus pentosus, 7 L. coryniformis, and 2 L. oligofermentans. The L. pentosus and L. coryniformis strains were subjected to further screening to evaluate their probiotic potential, using a combination of in vitro and in vivo approaches. The majority of them showed high survival rates under in vitro simulated gastro-intestinal conditions, and positive antimicrobial activity against Salmonella enterica serovar Typhimurium, Listeria monocytogenes and enterotoxigenic Escherichia coli (ETEC) pathogens. Evaluation of antibiotic resistance to ampicillin, tetracycline, chloramphenicol, or erythromycin was also performed for all selected strains. Three L. coryniformis strains were selected as very good performers in the initial in vitro testing screens, they were antibiotic susceptible, as well as capable of inhibiting pathogen growth in vitro. Parallel screening employing the simplified model organism Caenorhabditis elegans, fed the Lactobacillus strains as a food source, revealed that one L. pentosus and one L. coryniformis strains significantly induced prolongevity effects and protection from pathogen-mediated infection. Moreover, both strains displayed adhesion to human intestinal epithelial Caco-2 cells and were able to outcompete foodborne pathogens for cell adhesion. Overall, these results are suggestive of beneficial features for novel LAB strains, which renders them promising candidates as starters for the manufacturing of fermented table olives with probiotic added value

Barnes Hospital Record

https://digitalcommons.wustl.edu/bjc_barnes_record/1101/thumbnail.jp

Automatization of TDS data evaluation

Tato práce se zabývá automatizací vyhodnocování dat termální desorpční spektroskopie (TDS). Teoretická část pojednává o procesích adsorpce a desorpce atomů a molekul a teplotní závislosti desorpce. Součástí práce je také kvantitativní analýza signálu měřícího přístroje. Hlavním cílem praktické části bylo vytvoření počítačového programu na automatizaci vyhodnocování dat TDS. Popis programu a uživatelská příručka jsou také součástí práce. Proběhlo testování programu na předchozích měření a kinetické parametry desorpce byly zjištěny u několika vzorků.This bachelor thesis is focused on automatization of post-processing and evaluation of thermal desorption spectroscopy (TDS) data. The theoretical part discusses the processes of adsorption and desorption of atoms and molecules on surfaces and the thermal dependence of the latter. This work also provides a quantitative analysis of the measured signal from the instrument. The main objective of the practical part is to create a computer tool for automatization of TDS data evaluation. Description of the program, as well as a user guide, is included in the work. Comprehensive tests of the created program were concluded on previously measured TDS spectra and the kinetic parameters of several samples were determined.

Decidable Classes of Tree Automata Mixing Local and Global Constraints Modulo Flat Theories

We define a class of ranked tree automata TABG generalizing both the tree automata with local tests between brothers of Bogaert and Tison (1992) and with global equality and disequality constraints (TAGED) of Filiot et al. (2007). TABG can test for equality and disequality modulo a given flat equational theory between brother subterms and between subterms whose positions are defined by the states reached during a computation. In particular, TABG can check that all the subterms reaching a given state are distinct. This constraint is related to monadic key constraints for XML documents, meaning that every two distinct positions of a given type have different values. We prove decidability of the emptiness problem for TABG. This solves, in particular, the open question of the decidability of emptiness for TAGED. We further extend our result by allowing global arithmetic constraints for counting the number of occurrences of some state or the number of different equivalence classes of subterms (modulo a given flat equational theory) reaching some state during a computation. We also adapt the model to unranked ordered terms. As a consequence of our results for TABG, we prove the decidability of a fragment of the monadic second order logic on trees extended with predicates for equality and disequality between subtrees, and cardinality.Comment: 39 pages, to appear in LMCS journa

Spartan Daily, December 12, 1979

Volume 73, Issue 68https://scholarworks.sjsu.edu/spartandaily/6566/thumbnail.jp