Overview on agent-based social modelling and the use of formal languages

Transdisciplinary Models and Applications investigates a variety of programming languages used in validating and verifying models in order to assist in their eventual implementation. This book will explore different methods of evaluating and formalizing simulation models, enabling computer and industrial engineers, mathematicians, and students working with computer simulations to thoroughly understand the progression from simulation to product, improving the overall effectiveness of modeling systems.Postprint (author's final draft

Computational Modeling, Formal Analysis, and Tools for Systems Biology.

As the amount of biological data in the public domain grows, so does the range of modeling and analysis techniques employed in systems biology. In recent years, a number of theoretical computer science developments have enabled modeling methodology to keep pace. The growing interest in systems biology in executable models and their analysis has necessitated the borrowing of terms and methods from computer science, such as formal analysis, model checking, static analysis, and runtime verification. Here, we discuss the most important and exciting computational methods and tools currently available to systems biologists. We believe that a deeper understanding of the concepts and theory highlighted in this review will produce better software practice, improved investigation of complex biological processes, and even new ideas and better feedback into computer science

Industrial agents in the era of service-oriented architectures and cloudbased industrial infrastructures

The umbrella paradigm underpinning novel collaborative industrial systems is to consider the set of intelligent system units as a conglomerate of distributed, autonomous, intelligent, proactive, fault-tolerant, and reusable units, which operate as a set of cooperating entities (Colombo and Karnouskos, 2009). These entities are forming an evolvable infrastructure, entering and/or going out (plug-in/plugout) in an asynchronous manner. Moreover, these entities, having each of them their own functionalities, data, and associated information are now connected and able to interact. They are capable of working in a proactive manner, initiating collaborative actions and dynamically interacting with each other in order to achieve both local and global objectives.info:eu-repo/semantics/publishedVersio

Modeling formalisms in systems biology

Systems Biology has taken advantage of computational tools and high-throughput experimental data to model several biological processes. These include signaling, gene regulatory, and metabolic networks. However, most of these models are specific to each kind of network. Their interconnection demands a whole-cell modeling framework for a complete understanding of cellular systems. We describe the features required by an integrated framework for modeling, analyzing and simulating biological processes, and review several modeling formalisms that have been used in Systems Biology including Boolean networks, Bayesian networks, Petri nets, process algebras, constraint-based models, differential equations, rule-based models, interacting state machines, cellular automata, and agent-based models. We compare the features provided by different formalisms, and discuss recent approaches in the integration of these formalisms, as well as possible directions for the future.Research supported by grants SFRH/BD/35215/2007 and SFRH/BD/25506/2005 from the Fundacao para a Ciencia e a Tecnologia (FCT) and the MIT-Portugal Program through the project "Bridging Systems and Synthetic Biology for the development of improved microbial cell factories" (MIT-Pt/BS-BB/0082/2008)

A survey of simulation techniques in commerce and defence

Despite the developments in Modelling and Simulation (M&S) tools and techniques over the past years, there has been a gap in the M&S research and practice in healthcare on developing a toolkit to assist the modellers and simulation practitioners with selecting an appropriate set of techniques. This study is a preliminary step towards this goal. This paper presents some results from a systematic literature survey on applications of M&S in the commerce and defence domains that could inspire some improvements in the healthcare. Interim results show that in the commercial sector Discrete-Event Simulation (DES) has been the most widely used technique with System Dynamics (SD) in second place. However in the defence sector, SD has gained relatively more attention. SD has been found quite useful for qualitative and soft factors analysis. From both the surveys it becomes clear that there is a growing trend towards using hybrid M&S approaches

Overview on Agent-Based Social Modelling and the Use of Formal Languages

The use of agent-based modelling and simulation techniques in the social sciences has flourished in the recent decades. The main reason is that the object of study in these disciplines, human society present or past, is difficult to analyse through classical analytical techniques. Population dynamics and structures are inherently complex. Thus, other methodological techniques need to be found to more adequately study this field. In this context, agent-based modelling is encouraging the introduction of computer simulations to examine behavioural patterns in complex systems. Simulation provides a tool to artificially examine societies where a big number of actors with decision capacity coexist and interact. However, formal modelling in these areas has not traditionally been used compared to other fields of science, in particular in their use of formal languages during the modelling process. In this chapter, the authors aim to revise the most relevant aspects on modelling in social sciences and to discuss the use formal languages by social scientists

Engineering of service-oriented automation systems: a survey

The evolution of manufacturing systems and the emergence of decentralised control require flexibility at various levels of their lifecycle. New emerging methods, such as multi-agent and service-oriented systems are major research topics in the sense of revitalizing the traditional production procedures. This paper takes an overview of the serviceoriented approach in terms of platform and engineering tools, from the perspective of automation and production systems. From the basic foundation to the more complex interactions, service-oriented architectures and its implementation in form of web services provide diverse and quality proved features that are welcome to different states of the production systems’ life-cycle. Key elements are the concepts of modelling and collaboration, which enhance the automatic binding and synchronisation of individual low-value services to more complex and meaningful structures. Such interactions can be specified by Petri nets, a mathematically well founded tool with features that enhance towards the modelling of systems. The right application of different methodologies together should motivate the development of service-oriented manufacturing systems that embrace the vision of collaborative automation.The authors would like to thank the European Commission and the partners of Network of Excellence “Innovative Production Machines and Systems” (http://www.iproms.org/) and the SOCRADES project (http://www.socrades.eu) for their support.info:eu-repo/semantics/publishedVersio