A bibliography on parallel and vector numerical algorithms

This is a bibliography of numerical methods. It also includes a number of other references on machine architecture, programming language, and other topics of interest to scientific computing. Certain conference proceedings and anthologies which have been published in book form are listed also

A survey of parallel execution strategies for transitive closure and logic programs

An important feature of database technology of the nineties is the use of parallelism for speeding up the execution of complex queries. This technology is being tested in several experimental database architectures and a few commercial systems for conventional select-project-join queries. In particular, hash-based fragmentation is used to distribute data to disks under the control of different processors in order to perform selections and joins in parallel. With the development of new query languages, and in particular with the definition of transitive closure queries and of more general logic programming queries, the new dimension of recursion has been added to query processing. Recursive queries are complex; at the same time, their regular structure is particularly suited for parallel execution, and parallelism may give a high efficiency gain. We survey the approaches to parallel execution of recursive queries that have been presented in the recent literature. We observe that research on parallel execution of recursive queries is separated into two distinct subareas, one focused on the transitive closure of Relational Algebra expressions, the other one focused on optimization of more general Datalog queries. Though the subareas seem radically different because of the approach and formalism used, they have many common features. This is not surprising, because most typical Datalog queries can be solved by means of the transitive closure of simple algebraic expressions. We first analyze the relationship between the transitive closure of expressions in Relational Algebra and Datalog programs. We then review sequential methods for evaluating transitive closure, distinguishing iterative and direct methods. We address the parallelization of these methods, by discussing various forms of parallelization. Data fragmentation plays an important role in obtaining parallel execution; we describe hash-based and semantic fragmentation. Finally, we consider Datalog queries, and present general methods for parallel rule execution; we recognize the similarities between these methods and the methods reviewed previously, when the former are applied to linear Datalog queries. We also provide a quantitative analysis that shows the impact of the initial data distribution on the performance of methods

Towards developing robust algorithms for solving partial differential equations on MIMD machines

Methods for efficient computation of numerical algorithms on a wide variety of MIMD machines are proposed. These techniques reorganize the data dependency patterns to improve the processor utilization. The model problem finds the time-accurate solution to a parabolic partial differential equation discretized in space and implicitly marched forward in time. The algorithms are extensions of Jacobi and SOR. The extensions consist of iterating over a window of several timesteps, allowing efficient overlap of computation with communication. The methods increase the degree to which work can be performed while data are communicated between processors. The effect of the window size and of domain partitioning on the system performance is examined both by implementing the algorithm on a simulated multiprocessor system

Solution of partial differential equations on vector and parallel computers

The present status of numerical methods for partial differential equations on vector and parallel computers was reviewed. The relevant aspects of these computers are discussed and a brief review of their development is included, with particular attention paid to those characteristics that influence algorithm selection. Both direct and iterative methods are given for elliptic equations as well as explicit and implicit methods for initial boundary value problems. The intent is to point out attractive methods as well as areas where this class of computer architecture cannot be fully utilized because of either hardware restrictions or the lack of adequate algorithms. Application areas utilizing these computers are briefly discussed

Parallelizing the QUDA Library for Multi-GPU Calculations in Lattice Quantum Chromodynamics

Graphics Processing Units (GPUs) are having a transformational effect on numerical lattice quantum chromodynamics (LQCD) calculations of importance in nuclear and particle physics. The QUDA library provides a package of mixed precision sparse matrix linear solvers for LQCD applications, supporting single GPUs based on NVIDIA's Compute Unified Device Architecture (CUDA). This library, interfaced to the QDP++/Chroma framework for LQCD calculations, is currently in production use on the "9g" cluster at the Jefferson Laboratory, enabling unprecedented price/performance for a range of problems in LQCD. Nevertheless, memory constraints on current GPU devices limit the problem sizes that can be tackled. In this contribution we describe the parallelization of the QUDA library onto multiple GPUs using MPI, including strategies for the overlapping of communication and computation. We report on both weak and strong scaling for up to 32 GPUs interconnected by InfiniBand, on which we sustain in excess of 4 Tflops.Comment: 11 pages, 7 figures, to appear in the Proceedings of Supercomputing 2010 (submitted April 12, 2010

Parallel Gaussian elimination of a block tridiagonal matrix using multiple microcomputers

The solution of a block tridiagonal matrix using parallel processing is demonstrated. The multiprocessor system on which results were obtained and the software environment used to program that system are described. Theoretical partitioning and resource allocation for the Gaussian elimination method used to solve the matrix are discussed. The results obtained from running 1, 2 and 3 processor versions of the block tridiagonal solver are presented. The PASCAL source code for these solvers is given in the appendix, and may be transportable to other shared memory parallel processors provided that the synchronization outlines are reproduced on the target system

Exploiting parallel computing with limited program changes using a network of microcomputers

Network computing and multiprocessor computers are two discernible trends in parallel processing. The computational behavior of an iterative distributed process in which some subtasks are completed later than others because of an imbalance in computational requirements is of significant interest. The effects of asynchronus processing was studied. A small existing program was converted to perform finite element analysis by distributing substructure analysis over a network of four Apple IIe microcomputers connected to a shared disk, simulating a parallel computer. The substructure analysis uses an iterative, fully stressed, structural resizing procedure. A framework of beams divided into three substructures is used as the finite element model. The effects of asynchronous processing on the convergence of the design variables are determined by not resizing particular substructures on various iterations

Power System Simulation by Parallel Computation

The concept of parallel processing is applied to power system simulation. The Component Connection Model (CCM) and appropriate numerical methods, such as the Relaxation Algorithm, are established as a conceptual basis for the parallel simulation of small power networks and individual power system components. A commercially available multiprocessing system is introduced for the power system simulator, and the system is adapted to facilitate high-speed parallel simulations. Two separate strategies for controlling the parallel simulation, synchronous and asynchronous relaxation, are introduced, and their performances are evaluated for the parallel simulation of an induction motor drive system. The performances of the parallel methods are also compared to a similar simulation run on a single processor, and the results show that considerable simulation speed-up can be obtained when parallel processing is employed

Parallel alogorithms for MIMD parallel computers

This thesis mainly covers the design and analysis of asynchronous parallel algorithms that can be run on MIMD (Multiple Instruction Multiple Data) parallel computers, in particular the NEPTUNE system at Loughborough University. Initially the fundamentals of parallel computer architectures are introduced with different parallel architectures being described and compared. The principles of parallel programming and the design of parallel algorithms are also outlined. Also the main characteristics of the 4 processor MIMD NEPTUNE system are presented, and performance indicators, i.e. the speed-up and the efficiency factors are defined for the measurement of parallelism in a given system. Both numerical and non-numerical algorithms are covered in the thesis. In the numerical solution of partial differential equations, a new parallel 9-point block iterative method is developed. Here, the organization of the blocks is done in such a way that each process contains its own group of 9 points on the network, therefore, they can be run in parallel. The parallel implementation of both 9-point and 4- point block iterative methods were programmed using natural and redblack ordering with synchronous and asynchronous approaches. The results obtained for these different implementations were compared and analysed. Next the parallel version of the A.G.E. (Alternating Group Explicit) method is developed in which the explicit nature of the difference equation is revealed and exploited when applied to derive the solution of both linear and non-linear 2-point boundary value problems. Two strategies have been used in the implementation of the parallel A.G.E. method using the synchronous and asynchronous approaches. The results from these implementations were compared. Also for comparison reasons the results obtained from the parallel A.G.E. were compared with the ~ corresponding results obtained from the parallel versions of the Jacobi, Gauss-Seidel and S.O.R. methods. Finally, a computational complexity analysis of the parallel A.G.E. algorithms is included. In the area of non-numeric algorithms, the problems of sorting and searching were studied. The sorting methods which were investigated was the shell and the digit sort methods. with each method different parallel strategies and approaches were used and compared to find the best results which can be obtained on the parallel machine. In the searching methods, the sequential search algorithm in an unordered table and the binary search algorithms were investigated and implemented in parallel with a presentation of the results. Finally, a complexity analysis of these methods is presented. The thesis concludes with a chapter summarizing the main results