Breast Histopathology with High-Performance Computing and Deep Learning

The increasingly intensive collection of digitalized images of tumor tissue over the last decade made histopathology a demanding application in terms of computational and storage resources. With images containing billions of pixels, the need for optimizing and adapting histopathology to large-scale data analysis is compelling. This paper presents a modular pipeline with three independent layers for the detection of tumoros regions in digital specimens of breast lymph nodes with deep learning models. Our pipeline can be deployed either on local machines or high-performance computing resources with a containerized approach. The need for expertise in high-performance computing is removed by the self-sufficient structure of Docker containers, whereas a large possibility for customization is left in terms of deep learning models and hyperparameters optimization. We show that by deploying the software layers in different infrastructures we optimize both the data preprocessing and the network training times, further increasing the scalability of the application to datasets of approximatively 43 million images. The code is open source and available on Github

Automating Inspection of Tunnels With Photogrammetry and Deep Learning

Asset Management of large underground transportation infrastructure requires frequent and detailed inspections to assess its overall structural conditions and to focus available funds where required. At the time of writing, the common approach to perform visual inspections is heavily manual, therefore slow, expensive, and highly subjective. This research evaluates the applicability of an automated pipeline to perform visual inspections of underground infrastructure for asset management purposes. It also analyses the benefits of using lightweight and low-cost hardware versus high-end technology. The aim is to increase the automation in performing such task to overcome the main drawbacks of the traditional regime. It replaces subjectivity, approximation and limited repeatability of the manual inspection with objectivity and consistent accuracy. Moreover, it reduces the overall end-to-end time required for the inspection and the associated costs. This might translate to more frequent inspections per given budget, resulting in increased service life of the infrastructure. Shorter inspections have social benefits as well. In fact, local communities can rely on a safe transportation with minimum levels of disservice. At last, but not least, it drastically improves health and safety conditions for the inspection engineers who need to spend less time in this hazardous environment. The proposed pipeline combines photogrammetric techniques for photo-realistic 3D reconstructions alongside with machine learning-based defect detection algorithms. This approach allows to detect and map visible defects on the tunnel’s lining in local coordinate system and provides the asset manager with a clear overview of the critical areas over all infrastructure. The outcomes of the research show that the accuracy of the proposed pipeline largely outperforms human results, both in three-dimensional mapping and defect detection performance, pushing the benefit-cost ratio strongly in favour of the automated approach. Such outcomes will impact the way construction industry approaches visual inspections and shift towards automated strategies

An Efficient Gabor Walsh-Hadamard Transform Based Approach for Retrieving Brain Tumor Images from MRI

Brain tumors are a serious and death-defying disease for human life. Discovering an appropriate brain tumor image from a magnetic resonance imaging (MRI) archive is a challenging job for the radiologist. Most search engines retrieve images on the basis of traditional text-based approaches. The main challenge in the MRI image analysis is that low-level visual information captured by the MRI machine and the high-level information identified by the assessor. This semantic gap is addressed in this study by designing a new feature extraction technique. In this paper, we introduce Content-Based Medical Image retrieval (CBMIR) system for retrieval of brain tumor images from the large data. Firstly, we remove noise from MRI images employing several filtering techniques. Afterward, we design a feature extraction scheme combining Gabor filtering technique (which is mainly focused on specific frequency content at the image region) and Walsh-Hadamard transform (WHT) (conquer technique for easy configuration of image) for discovering representative features from MRI images. After that, for retrieving the accurate and reliable image, we employ Fuzzy C-Means clustering Minkowski distance metric that can evaluate the similarity between the query image and database images. The proposed methodology design was tested on a publicly available brain tumor MRI image database. The experimental results demonstrate that our proposed approach outperforms most of the existing techniques like Gabor, wavelet, and Hough transform in detecting brain tumors and also take less time. The proposed approach will be beneficial for radiologists and also for technologists to build an automatic decision support system that will produce reproducible and objective results with high accuracy

Machine Learning Research Trends in Africa: A 30 Years Overview with Bibliometric Analysis Review

In this paper, a critical bibliometric analysis study is conducted, coupled with an extensive literature survey on recent developments and associated applications in machine learning research with a perspective on Africa. The presented bibliometric analysis study consists of 2761 machine learning-related documents, of which 98% were articles with at least 482 citations published in 903 journals during the past 30 years. Furthermore, the collated documents were retrieved from the Science Citation Index EXPANDED, comprising research publications from 54 African countries between 1993 and 2021. The bibliometric study shows the visualization of the current landscape and future trends in machine learning research and its application to facilitate future collaborative research and knowledge exchange among authors from different research institutions scattered across the African continent

Artificial Intelligence in the Creative Industries: A Review

This paper reviews the current state of the art in Artificial Intelligence (AI) technologies and applications in the context of the creative industries. A brief background of AI, and specifically Machine Learning (ML) algorithms, is provided including Convolutional Neural Network (CNNs), Generative Adversarial Networks (GANs), Recurrent Neural Networks (RNNs) and Deep Reinforcement Learning (DRL). We categorise creative applications into five groups related to how AI technologies are used: i) content creation, ii) information analysis, iii) content enhancement and post production workflows, iv) information extraction and enhancement, and v) data compression. We critically examine the successes and limitations of this rapidly advancing technology in each of these areas. We further differentiate between the use of AI as a creative tool and its potential as a creator in its own right. We foresee that, in the near future, machine learning-based AI will be adopted widely as a tool or collaborative assistant for creativity. In contrast, we observe that the successes of machine learning in domains with fewer constraints, where AI is the `creator', remain modest. The potential of AI (or its developers) to win awards for its original creations in competition with human creatives is also limited, based on contemporary technologies. We therefore conclude that, in the context of creative industries, maximum benefit from AI will be derived where its focus is human centric -- where it is designed to augment, rather than replace, human creativity

Applied Deep Learning: Case Studies in Computer Vision and Natural Language Processing

Deep learning has proved to be successful for many computer vision and natural language processing applications. In this dissertation, three studies have been conducted to show the efficacy of deep learning models for computer vision and natural language processing. In the first study, an efficient deep learning model was proposed for seagrass scar detection in multispectral images which produced robust, accurate scars mappings. In the second study, an arithmetic deep learning model was developed to fuse multi-spectral images collected at different times with different resolutions to generate high-resolution images for downstream tasks including change detection, object detection, and land cover classification. In addition, a super-resolution deep model was implemented to further enhance remote sensing images. In the third study, a deep learning-based framework was proposed for fact-checking on social media to spot fake scientific news. The framework leveraged deep learning, information retrieval, and natural language processing techniques to retrieve pertinent scholarly papers for given scientific news and evaluate the credibility of the news

Archaeology or crime scene? Teeth micro and macro structure analysis as dating variable

Simple methods to aid in the determination of forensic or archaeologic relevancy of skeletonized remains have been researched since the 1950s. With advances in microscopic imaging techniques and machine learning computer data analysis methods the relevancy of decontextualized, comingled remains has room for improvement. This thesis is a study done to pioneer a new approach to analyzing dental skeletal remains to determine forensic relevancy. Archaeological dental samples collected from the ancient city of Ur in modern day southern Iraq in addition to modern dental extractions were processed for scanning electron microscopy imaging. Archaeological and modern samples displayed different surface and dentinal tubule opening characteristics. The image files were then analyzed using a custom-built convolutional neural net model. The model’s performance metrics indicate that the model made better than random predictions based on learned associations. Thus, the use of scanning electron microscopy and machine learning analysis techniques has potential in distinguishing archaeological dental samples from modern dental samples