Acoustic sensor network geometry calibration and applications

In the modern world, we are increasingly surrounded by computation devices with communication links and one or more microphones. Such devices are, for example, smartphones, tablets, laptops or hearing aids. These devices can work together as nodes in an acoustic sensor network (ASN). Such networks are a growing platform that opens the possibility for many practical applications. ASN based speech enhancement, source localization, and event detection can be applied for teleconferencing, camera control, automation, or assisted living. For this kind of applications, the awareness of auditory objects and their spatial positioning are key properties. In order to provide these two kinds of information, novel methods have been developed in this thesis. Information on the type of auditory objects is provided by a novel real-time sound classification method. Information on the position of human speakers is provided by a novel localization and tracking method. In order to localize with respect to the ASN, the relative arrangement of the sensor nodes has to be known. Therefore, different novel geometry calibration methods were developed. Sound classification The first method addresses the task of identification of auditory objects. A novel application of the bag-of-features (BoF) paradigm on acoustic event classification and detection was introduced. It can be used for event and speech detection as well as for speaker identification. The use of both mel frequency cepstral coefficient (MFCC) and Gammatone frequency cepstral coefficient (GFCC) features improves the classification accuracy. By using soft quantization and introducing supervised training for the BoF model, superior accuracy is achieved. The method generalizes well from limited training data. It is working online and can be computed in a fraction of real-time. By a dedicated training strategy based on a hierarchy of stationarity, the detection of speech in mixtures with noise was realized. This makes the method robust against severe noises levels corrupting the speech signal. Thus it is possible to provide control information to a beamformer in order to realize blind speech enhancement. A reliable improvement is achieved in the presence of one or more stationary noise sources. Speaker localization The localization method enables each node to determine the direction of arrival (DoA) of concurrent sound sources. The author's neuro-biologically inspired speaker localization method for microphone arrays was refined for the use in ASNs. By implementing a dedicated cochlear and midbrain model, it is robust against the reverberation found in indoor rooms. In order to better model the unknown number of concurrent speakers, an application of the EM algorithm that realizes probabilistic clustering according to auditory scene analysis (ASA) principles was introduced. Based on this approach, a system for Euclidean tracking in ASNs was designed. Each node applies the node wise localization method and shares probabilistic DoA estimates together with an estimate of the spectral distribution with the network. As this information is relatively sparse, it can be transmitted with low bandwidth. The system is robust against jitter and transmission errors. The information from all nodes is integrated according to spectral similarity to correctly associate concurrent speakers. By incorporating the intersection angle in the triangulation, the precision of the Euclidean localization is improved. Tracks of concurrent speakers are computed over time, as is shown with recordings in a reverberant room. Geometry calibration The central task of geometry calibration has been solved with special focus on sensor nodes equipped with multiple microphones. Novel methods were developed for different scenarios. An audio-visual method was introduced for the calibration of ASNs in video conferencing scenarios. The DoAs estimates are fused with visual speaker tracking in order to provide sensor positions in a common coordinate system. A novel acoustic calibration method determines the relative positioning of the nodes from ambient sounds alone. Unlike previous methods that only infer the positioning of distributed microphones, the DoA is incorporated and thus it becomes possible to calibrate the orientation of the nodes with a high accuracy. This is very important for all applications using the spatial information, as the triangulation error increases dramatically with bad orientation estimates. As speech events can be used, the calibration becomes possible without the requirement of playing dedicated calibration sounds. Based on this, an online method employing a genetic algorithm with incremental measurements was introduced. By using the robust speech localization method, the calibration is computed in parallel to the tracking. The online method is be able to calibrate ASNs in real time, as is shown with recordings of natural speakers in a reverberant room. The informed acoustic sensor network All new methods are important building blocks for the use of ASNs. The online methods for localization and calibration both make use of the neuro-biologically inspired processing in the nodes which leads to state-of-the-art results, even in reverberant enclosures. The high robustness and reliability can be improved even more by including the event detection method in order to exclude non-speech events. When all methods are combined, both semantic information on what is happening in the acoustic scene as well as spatial information on the positioning of the speakers and sensor nodes is automatically acquired in real time. This realizes truly informed audio processing in ASNs. Practical applicability is shown by application to recordings in reverberant rooms. The contribution of this thesis is thus not only to advance the state-of-the-art in automatically acquiring information on the acoustic scene, but also pushing the practical applicability of such methods

Change detection in combination with spatial models and its effectiveness on underwater scenarios

This thesis proposes a novel change detection approach for underwater scenarios and combines it with different especially developed spatial models, this allows accurate and spatially coherent detection of any moving objects with a static camera in arbitrary environments. To deal with the special problems of underwater imaging pre-segmentations based on the optical flow and other special adaptions were added to the change detection algorithm so that it can better handle typical underwater scenarios like a scene crowded by a whole fish swarm

A computational framework to emulate the human perspective in flow cytometric data analysis

Background: In recent years, intense research efforts have focused on developing methods for automated flow cytometric data analysis. However, while designing such applications, little or no attention has been paid to the human perspective that is absolutely central to the manual gating process of identifying and characterizing cell populations. In particular, the assumption of many common techniques that cell populations could be modeled reliably with pre-specified distributions may not hold true in real-life samples, which can have populations of arbitrary shapes and considerable inter-sample variation. <p/>Results: To address this, we developed a new framework flowScape for emulating certain key aspects of the human perspective in analyzing flow data, which we implemented in multiple steps. First, flowScape begins with creating a mathematically rigorous map of the high-dimensional flow data landscape based on dense and sparse regions defined by relative concentrations of events around modes. In the second step, these modal clusters are connected with a global hierarchical structure. This representation allows flowScape to perform ridgeline analysis for both traversing the landscape and isolating cell populations at different levels of resolution. Finally, we extended manual gating with a new capacity for constructing templates that can identify target populations in terms of their relative parameters, as opposed to the more commonly used absolute or physical parameters. This allows flowScape to apply such templates in batch mode for detecting the corresponding populations in a flexible, sample-specific manner. We also demonstrated different applications of our framework to flow data analysis and show its superiority over other analytical methods. <p/>Conclusions: The human perspective, built on top of intuition and experience, is a very important component of flow cytometric data analysis. By emulating some of its approaches and extending these with automation and rigor, flowScape provides a flexible and robust framework for computational cytomics

An information adaptive system study report and development plan

The purpose of the information adaptive system (IAS) study was to determine how some selected Earth resource applications may be processed onboard a spacecraft and to provide a detailed preliminary IAS design for these applications. Detailed investigations of a number of applications were conducted with regard to IAS and three were selected for further analysis. Areas of future research and development include algorithmic specifications, system design specifications, and IAS recommended time lines

An end-to-end framework for real-time automatic sleep stage classification.

Sleep staging is a fundamental but time consuming process in any sleep laboratory. To greatly speed up sleep staging without compromising accuracy, we developed a novel framework for performing real-time automatic sleep stage classification. The client-server architecture adopted here provides an end-to-end solution for anonymizing and efficiently transporting polysomnography data from the client to the server and for receiving sleep stages in an interoperable fashion. The framework intelligently partitions the sleep staging task between the client and server in a way that multiple low-end clients can work with one server, and can be deployed both locally as well as over the cloud. The framework was tested on four datasets comprising ≈1700 polysomnography records (≈12000 hr of recordings) collected from adolescents, young, and old adults, involving healthy persons as well as those with medical conditions. We used two independent validation datasets: one comprising patients from a sleep disorders clinic and the other incorporating patients with Parkinson's disease. Using this system, an entire night's sleep was staged with an accuracy on par with expert human scorers but much faster (≈5 s compared with 30-60 min). To illustrate the utility of such real-time sleep staging, we used it to facilitate the automatic delivery of acoustic stimuli at targeted phase of slow-sleep oscillations to enhance slow-wave sleep

Cerebrovascular segmentation from MRA images

There is provided a method of processing a cerebrovascular medical image, the method comprising receiving magnetic resonance angiography (MRA) image associated with a cerebrovascular tissue comprising blood vessels and brain tissues other than blood vessels; segmenting MRA image using a prior appearance model for generating first prior appearance features representing a first-order prior appearance model and second appearance features representing a second-order prior appearance model of the cerebrovascular tissue, wherein current appearance model comprises a 3D Markov-Gibbs Random Field (MGRF) having a 2D rotational and translational symmetry such that MGRF model is 2D rotation and translation invariant; segmenting MRA image using current appearance model for generating current appearance features distinguishing blood vessels from other brain tissues; adjusting MRA image using first and second prior appearance features and current appearance futures; and generating an enhanced MRA image based on said adjustment. There is also provided a system for doing the same. Application US16/159,790 events 2018-10-15 Application filed by Zayed University 2018-10-15 Priority to US16/159,790 2018-10-15 Assigned to Zayed University 2020-04-16 Publication of US20200116808A1 2020-09-08 Application granted 2020-09-08 Publication of US10768259B2 Status Active 2039-03-02 Adjusted expiratio

Unsupervised maritime target detection

The unsupervised detection of maritime targets in grey scale video is a difficult problem in maritime video surveillance. Most approaches assume that the camera is static and employ pixel-wise background modelling techniques for foreground detection; other methods rely on colour or thermal information to detect targets. These methods fail in real-world situations when the static camera assumption is violated, and colour or thermal data is unavailable. In defence and security applications, prior information and training samples of targets may be unavailable for training a classifier; the learning of a one class classifier for the background may be impossible as well. Thus, an unsupervised online approach that attempts to learn from the scene data is highly desirable. In this thesis, the characteristics of the maritime scene and the ocean texture are exploited for foreground detection. Two fast and effective methods are investigated for target detection. Firstly, online regionbased background texture models are explored for describing the appearance of the ocean. This approach avoids the need for frame registration because the model is built spatially rather than temporally. The texture appearance of the ocean is described using Local Binary Pattern (LBP) descriptors. Two models are proposed: one model is a Gaussian Mixture (GMM) and the other, referred to as a Sparse Texture Model (STM), is a set of histogram texture distributions. The foreground detections are optimized using a Graph Cut (GC) that enforces spatial coherence. Secondly, feature tracking is investigated as a means of detecting stable features in an image frame that typically correspond to maritime targets; unstable features are background regions. This approach is a Track-Before-Detect (TBD) concept and it is implemented using a hierarchical scheme for motion estimation, and matching of Scale- Invariant Feature Transform (SIFT) appearance features. The experimental results show that these approaches are feasible for foreground detection in maritime video when the camera is either static or moving. Receiver Operating Characteristic (ROC) curves were generated for five test sequences and the Area Under the ROC Curve (AUC) was analyzed for the performance of the proposed methods. The texture models, without GC optimization, achieved an AUC of 0.85 or greater on four out of the five test videos. At 50% True Positive Rate (TPR), these four test scenarios had a False Positive Rate (FPR) of less than 2%. With the GC optimization, an AUC of greater than 0.8 was achieved for all the test cases and the FPR was reduced in all cases when compared to the results without the GC. In comparison to the state of the art in background modelling for maritime scenes, our texture model methods achieved the best performance or comparable performance. The two texture models executed at a reasonable processing frame rate. The experimental results for TBD show that one may detect target features using a simple track score based on the track length. At 50% TPR a FPR of less than 4% is achieved for four out of the five test scenarios. These results are very promising for maritime target detection

Video Classification System Based on Representation Techniques Using Kernel Methods and Bayesian Inference

En este trabajo propusimos diferentes estrategias de representación de características para el procesamiento de video. Nuestro principal objetivo es revelar patrones discriminantes de datos de video para mejorar la tarea de visión por computadora, reconocimiento de acción humana. Con este fin, propusimos utilizar un análisis de relevancia basado en un núcleo para reconocer los descriptores mas relevantes relacionados con el conocimiento de acciones. Además, la propuesta permite calcular una matriz de proyección lineal para mapear muestras de video en un nuevo espacio, donde se preserva la separabilidad de clases y se reduce la dimensionalidad de la representación

Generalizable automated pixel-level structural segmentation of medical and biological data

Over the years, the rapid expansion in imaging techniques and equipments has driven the demand for more automation in handling large medical and biological data sets. A wealth of approaches have been suggested as optimal solutions for their respective imaging types. These solutions span various image resolutions, modalities and contrast (staining) mechanisms. Few approaches generalise well across multiple image types, contrasts or resolution. This thesis proposes an automated pixel-level framework that addresses 2D, 2D+t and 3D structural segmentation in a more generalizable manner, yet has enough adaptability to address a number of specific image modalities, spanning retinal funduscopy, sequential fluorescein angiography and two-photon microscopy. The pixel-level segmentation scheme involves: i ) constructing a phase-invariant orientation field of the local spatial neighbourhood; ii ) combining local feature maps with intensity-based measures in a structural patch context; iii ) using a complex supervised learning process to interpret the combination of all the elements in the patch in order to reach a classification decision. This has the advantage of transferability from retinal blood vessels in 2D to neural structures in 3D. To process the temporal components in non-standard 2D+t retinal angiography sequences, we first introduce a co-registration procedure: at the pairwise level, we combine projective RANSAC with a quadratic homography transformation to map the coordinate systems between any two frames. At the joint level, we construct a hierarchical approach in order for each individual frame to be registered to the global reference intra- and inter- sequence(s). We then take a non-training approach that searches in both the spatial neighbourhood of each pixel and the filter output across varying scales to locate and link microvascular centrelines to (sub-) pixel accuracy. In essence, this \link while extract" piece-wise segmentation approach combines the local phase-invariant orientation field information with additional local phase estimates to obtain a soft classification of the centreline (sub-) pixel locations. Unlike retinal segmentation problems where vasculature is the main focus, 3D neural segmentation requires additional exibility, allowing a variety of structures of anatomical importance yet with different geometric properties to be differentiated both from the background and against other structures. Notably, cellular structures, such as Purkinje cells, neural dendrites and interneurons, all display certain elongation along their medial axes, yet each class has a characteristic shape captured by an orientation field that distinguishes it from other structures. To take this into consideration, we introduce a 5D orientation mapping to capture these orientation properties. This mapping is incorporated into the local feature map description prior to a learning machine. Extensive performance evaluations and validation of each of the techniques presented in this thesis is carried out. For retinal fundus images, we compute Receiver Operating Characteristic (ROC) curves on existing public databases (DRIVE & STARE) to assess and compare our algorithms with other benchmark methods. For 2D+t retinal angiography sequences, we compute the error metrics ("Centreline Error") of our scheme with other benchmark methods. For microscopic cortical data stacks, we present segmentation results on both surrogate data with known ground-truth and experimental rat cerebellar cortex two-photon microscopic tissue stacks.Open Acces