Veni Vidi Vici, A Three-Phase Scenario For Parameter Space Analysis in Image Analysis and Visualization

Automatic analysis of the enormous sets of images is a critical task in life sciences. This faces many challenges such as: algorithms are highly parameterized, significant human input is intertwined, and lacking a standard meta-visualization approach. This paper proposes an alternative iterative approach for optimizing input parameters, saving time by minimizing the user involvement, and allowing for understanding the workflow of algorithms and discovering new ones. The main focus is on developing an interactive visualization technique that enables users to analyze the relationships between sampled input parameters and corresponding output. This technique is implemented as a prototype called Veni Vidi Vici, or "I came, I saw, I conquered." This strategy is inspired by the mathematical formulas of numbering computable functions and is developed atop ImageJ, a scientific image processing program. A case study is presented to investigate the proposed framework. Finally, the paper explores some potential future issues in the application of the proposed approach in parameter space analysis in visualization

Distance Measures for Reduced Ordering Based Vector Filters

Reduced ordering based vector filters have proved successful in removing long-tailed noise from color images while preserving edges and fine image details. These filters commonly utilize variants of the Minkowski distance to order the color vectors with the aim of distinguishing between noisy and noise-free vectors. In this paper, we review various alternative distance measures and evaluate their performance on a large and diverse set of images using several effectiveness and efficiency criteria. The results demonstrate that there are in fact strong alternatives to the popular Minkowski metrics

Local Variation as a Statistical Hypothesis Test

The goal of image oversegmentation is to divide an image into several pieces, each of which should ideally be part of an object. One of the simplest and yet most effective oversegmentation algorithms is known as local variation (LV) (Felzenszwalb and Huttenlocher 2004). In this work, we study this algorithm and show that algorithms similar to LV can be devised by applying different statistical models and decisions, thus providing further theoretical justification and a well-founded explanation for the unexpected high performance of the LV approach. Some of these algorithms are based on statistics of natural images and on a hypothesis testing decision; we denote these algorithms probabilistic local variation (pLV). The best pLV algorithm, which relies on censored estimation, presents state-of-the-art results while keeping the same computational complexity of the LV algorithm

Reading Scene Text in Deep Convolutional Sequences

We develop a Deep-Text Recurrent Network (DTRN) that regards scene text reading as a sequence labelling problem. We leverage recent advances of deep convolutional neural networks to generate an ordered high-level sequence from a whole word image, avoiding the difficult character segmentation problem. Then a deep recurrent model, building on long short-term memory (LSTM), is developed to robustly recognize the generated CNN sequences, departing from most existing approaches recognising each character independently. Our model has a number of appealing properties in comparison to existing scene text recognition methods: (i) It can recognise highly ambiguous words by leveraging meaningful context information, allowing it to work reliably without either pre- or post-processing; (ii) the deep CNN feature is robust to various image distortions; (iii) it retains the explicit order information in word image, which is essential to discriminate word strings; (iv) the model does not depend on pre-defined dictionary, and it can process unknown words and arbitrary strings. Codes for the DTRN will be available.Comment: To appear in the 13th AAAI Conference on Artificial Intelligence (AAAI-16), 201

Shaped extensions of singular spectrum analysis

Extensions of singular spectrum analysis (SSA) for processing of non-rectangular images and time series with gaps are considered. A circular version is suggested, which allows application of the method to the data given on a circle or on a cylinder, e.g. cylindrical projection of a 3D ellipsoid. The constructed Shaped SSA method with planar or circular topology is able to produce low-rank approximations for images of complex shapes. Together with Shaped SSA, a shaped version of the subspace-based ESPRIT method for frequency estimation is developed. Examples of 2D circular SSA and 2D Shaped ESPRIT are presented

Computing Multidimensional Persistence

The theory of multidimensional persistence captures the topology of a multifiltration -- a multiparameter family of increasing spaces. Multifiltrations arise naturally in the topological analysis of scientific data. In this paper, we give a polynomial time algorithm for computing multidimensional persistence. We recast this computation as a problem within computational algebraic geometry and utilize algorithms from this area to solve it. While the resulting problem is Expspace-complete and the standard algorithms take doubly-exponential time, we exploit the structure inherent withing multifiltrations to yield practical algorithms. We implement all algorithms in the paper and provide statistical experiments to demonstrate their feasibility.Comment: This paper has been withdrawn by the authors. Journal of Computational Geometry, 1(1) 2010, pages 72-100. http://jocg.org/index.php/jocg/article/view/1