On vector-kronecker product multiplication with rectangular factors

The infinitesimal generator matrix underlying a multidimensional Markov chain can be represented compactly by using sums of Kronecker products of small rectangular matrices. For such compact representations, analysis methods based on vector-Kronecker product multiplication need to be employed. When the factors in the Kronecker product terms are relatively dense, vector- Kronecker product multiplication can be performed efficiently by the shuffle algorithm. When the factors are relatively sparse, it may be more efficient to obtain nonzero elements of the generator matrix in Kronecker form on the fly and multiply them with corresponding elements of the vector. This work proposes a modification to the shuffle algorithm that multiplies relevant elements of the vector with submatrices of factors in which zero rows and columns are omitted. This approach avoids unnecessary floating-point operations that evaluate to zero during the course of the multiplication and possibly reduces the amount of memory used. Numerical experiments on a large number of models indicate that in many cases the modified shuffle algorithm performs a smaller number of floating-point operations than the shuffle algorithm and the algorithm that generates nonzeros on the fly, sometimes with a minimum number of floating-point operations and as little of memory possible. © 2015 Society for Industrial and Applied Mathematics

Computational linear algebra over finite fields

We present here algorithms for efficient computation of linear algebra problems over finite fields

No occurrence obstructions in geometric complexity theory

The permanent versus determinant conjecture is a major problem in complexity theory that is equivalent to the separation of the complexity classes VP_{ws} and VNP. Mulmuley and Sohoni (SIAM J. Comput., 2001) suggested to study a strengthened version of this conjecture over the complex numbers that amounts to separating the orbit closures of the determinant and padded permanent polynomials. In that paper it was also proposed to separate these orbit closures by exhibiting occurrence obstructions, which are irreducible representations of GL_{n^2}(C), which occur in one coordinate ring of the orbit closure, but not in the other. We prove that this approach is impossible. However, we do not rule out the general approach to the permanent versus determinant problem via multiplicity obstructions as proposed by Mulmuley and Sohoni.Comment: Substantial revision. This version contains an overview of the proof of the main result. Added material on the model of power sums. Theorem 4.14 in the old version, which had a complicated proof, became the easy Theorem 5.4. To appear in the Journal of the AM

Block Circulant and Toeplitz Structures in the Linearized Hartree–Fock Equation on Finite Lattices: Tensor Approach

This paper introduces and analyses the new grid-based tensor approach to approximate solution of the elliptic eigenvalue problem for the 3D lattice-structured systems. We consider the linearized Hartree-Fock equation over a spatial $L_1\times L_2\times L_3$ lattice for both periodic and non-periodic problem setting, discretized in the localized Gaussian-type orbitals basis. In the periodic case, the Galerkin system matrix obeys a three-level block-circulant structure that allows the FFT-based diagonalization, while for the finite extended systems in a box (Dirichlet boundary conditions) we arrive at the perturbed block-Toeplitz representation providing fast matrix-vector multiplication and low storage size. The proposed grid-based tensor techniques manifest the twofold benefits: (a) the entries of the Fock matrix are computed by 1D operations using low-rank tensors represented on a 3D grid, (b) in the periodic case the low-rank tensor structure in the diagonal blocks of the Fock matrix in the Fourier space reduces the conventional 3D FFT to the product of 1D FFTs. Lattice type systems in a box with Dirichlet boundary conditions are treated numerically by our previous tensor solver for single molecules, which makes possible calculations on rather large $L_1\times L_2\times L_3$ lattices due to reduced numerical cost for 3D problems. The numerical simulations for both box-type and periodic $L\times 1\times 1$ lattice chain in a 3D rectangular "tube" with $L$ up to several hundred confirm the theoretical complexity bounds for the block-structured eigenvalue solvers in the limit of large $L$.Comment: 30 pages, 12 figures. arXiv admin note: substantial text overlap with arXiv:1408.383

Approximate tensor-product preconditioners for very high order discontinuous Galerkin methods

In this paper, we develop a new tensor-product based preconditioner for discontinuous Galerkin methods with polynomial degrees higher than those typically employed. This preconditioner uses an automatic, purely algebraic method to approximate the exact block Jacobi preconditioner by Kronecker products of several small, one-dimensional matrices. Traditional matrix-based preconditioners require $\mathcal{O}(p^{2d})$ storage and $\mathcal{O}(p^{3d})$ computational work, where $p$ is the degree of basis polynomials used, and $d$ is the spatial dimension. Our SVD-based tensor-product preconditioner requires $\mathcal{O}(p^{d+1})$ storage, $\mathcal{O}(p^{d+1})$ work in two spatial dimensions, and $\mathcal{O}(p^{d+2})$ work in three spatial dimensions. Combined with a matrix-free Newton-Krylov solver, these preconditioners allow for the solution of DG systems in linear time in $p$ per degree of freedom in 2D, and reduce the computational complexity from $\mathcal{O}(p^9)$ to $\mathcal{O}(p^5)$ in 3D. Numerical results are shown in 2D and 3D for the advection and Euler equations, using polynomials of degree up to $p=15$. For many test cases, the preconditioner results in similar iteration counts when compared with the exact block Jacobi preconditioner, and performance is significantly improved for high polynomial degrees $p$.Comment: 40 pages, 15 figure

Tensor and Matrix Inversions with Applications

Higher order tensor inversion is possible for even order. We have shown that a tensor group endowed with the Einstein (contracted) product is isomorphic to the general linear group of degree $n$. With the isomorphic group structures, we derived new tensor decompositions which we have shown to be related to the well-known canonical polyadic decomposition and multilinear SVD. Moreover, within this group structure framework, multilinear systems are derived, specifically, for solving high dimensional PDEs and large discrete quantum models. We also address multilinear systems which do not fit the framework in the least-squares sense, that is, when the tensor has an odd number of modes or when the tensor has distinct dimensions in each modes. With the notion of tensor inversion, multilinear systems are solvable. Numerically we solve multilinear systems using iterative techniques, namely biconjugate gradient and Jacobi methods in tensor format

A Spectral Theory for Tensors

In this paper we propose a general spectral theory for tensors. Our proposed factorization decomposes a tensor into a product of orthogonal and scaling tensors. At the same time, our factorization yields an expansion of a tensor as a summation of outer products of lower order tensors . Our proposed factorization shows the relationship between the eigen-objects and the generalised characteristic polynomials. Our framework is based on a consistent multilinear algebra which explains how to generalise the notion of matrix hermicity, matrix transpose, and most importantly the notion of orthogonality. Our proposed factorization for a tensor in terms of lower order tensors can be recursively applied so as to naturally induces a spectral hierarchy for tensors.Comment: The paper is an updated version of an earlier versio