Parallel load balancing strategy for Volume-of-Fluid methods on 3-D unstructured meshes

© 2016. This version is made available under the CC-BY-NC-ND 4.0 license http://creativecommons.org/licenses/by-nc-nd/4.0/l Volume-of-Fluid (VOF) is one of the methods of choice to reproduce the interface motion in the simulation of multi-fluid flows. One of its main strengths is its accuracy in capturing sharp interface geometries, although requiring for it a number of geometric calculations. Under these circumstances, achieving parallel performance on current supercomputers is a must. The main obstacle for the parallelization is that the computing costs are concentrated only in the discrete elements that lie on the interface between fluids. Consequently, if the interface is not homogeneously distributed throughout the domain, standard domain decomposition (DD) strategies lead to imbalanced workload distributions. In this paper, we present a new parallelization strategy for general unstructured VOF solvers, based on a dynamic load balancing process complementary to the underlying DD. Its parallel efficiency has been analyzed and compared to the DD one using up to 1024 CPU-cores on an Intel SandyBridge based supercomputer. The results obtained on the solution of several artificially generated test cases show a speedup of up to similar to 12x with respect to the standard DD, depending on the interface size, the initial distribution and the number of parallel processes engaged. Moreover, the new parallelization strategy presented is of general purpose, therefore, it could be used to parallelize any VOF solver without requiring changes on the coupled flow solver. Finally, note that although designed for the VOF method, our approach could be easily adapted to other interface-capturing methods, such as the Level-Set, which may present similar workload imbalances. (C) 2014 Elsevier Inc. Allrights reserved.Peer ReviewedPostprint (author's final draft

Multi-GPU maximum entropy image synthesis for radio astronomy

The maximum entropy method (MEM) is a well known deconvolution technique in radio-interferometry. This method solves a non-linear optimization problem with an entropy regularization term. Other heuristics such as CLEAN are faster but highly user dependent. Nevertheless, MEM has the following advantages: it is unsupervised, it has a statistical basis, it has a better resolution and better image quality under certain conditions. This work presents a high performance GPU version of non-gridding MEM, which is tested using real and simulated data. We propose a single-GPU and a multi-GPU implementation for single and multi-spectral data, respectively. We also make use of the Peer-to-Peer and Unified Virtual Addressing features of newer GPUs which allows to exploit transparently and efficiently multiple GPUs. Several ALMA data sets are used to demonstrate the effectiveness in imaging and to evaluate GPU performance. The results show that a speedup from 1000 to 5000 times faster than a sequential version can be achieved, depending on data and image size. This allows to reconstruct the HD142527 CO(6-5) short baseline data set in 2.1 minutes, instead of 2.5 days that takes a sequential version on CPU.Comment: 11 pages, 13 figure

Adaptive query parallelization in multi-core column stores

With the rise of multi-core CPU platforms, their optimal utilization for in-memory OLAP workloads using column store databases has become one of the biggest challenges. Some of the inherent limi- tations in the achievable query parallelism are due to the degree of parallelism dependency on the data skew, the overheads incurred by thread coordination, and the hardware resource limits. Finding the right balance between the degree of parallelism and the multi-core utilizati

Achieving Energy Efficiency on Networking Systems with Optimization Algorithms and Compressed Data Structures

To cope with the increasing quantity, capacity and energy consumption of transmission and routing equipment in the Internet, energy efficiency of communication networks has attracted more and more attention from researchers around the world. In this dissertation, we proposed three methodologies to achieve energy efficiency on networking devices: the NP-complete problems and heuristics, the compressed data structures, and the combination of the first two methods. We first consider the problem of achieving energy efficiency in Data Center Networks (DCN). We generalize the energy efficiency networking problem in data centers as optimal flow assignment problems, which is NP-complete, and then propose a heuristic called CARPO, a correlation-aware power optimization algorithm, that dynamically consolidate traffic flows onto a small set of links and switches in a DCN and then shut down unused network devices for power savings. We then achieve energy efficiency on Internet routers by using the compressive data structure. A novel data structure called the Probabilistic Bloom Filter (PBF), which extends the classical bloom filter into the probabilistic direction, so that it can effectively identify heavy hitters with a small memory foot print to reduce energy consumption of network measurement. To achieve energy efficiency on Wireless Sensor Networks (WSN), we developed one data collection protocol called EDAL, which stands for Energy-efficient Delay-aware Lifetime-balancing data collection. Based on the Open Vehicle Routing problem, EDAL exploits the topology requirements of Compressive Sensing (CS), then implement CS to save more energy on sensor nodes

Heuristics for optimizing 3D mapping missions over swarm-powered ad hoc clouds

Drones have been getting more and more popular in many economy sectors. Both scientific and industrial communities aim at making the impact of drones even more disruptive by empowering collaborative autonomous behaviors -- also known as swarming behaviors -- within fleets of multiple drones. In swarming-powered 3D mapping missions, unmanned aerial vehicles typically collect the aerial pictures of the target area whereas the 3D reconstruction process is performed in a centralized manner. However, such approaches do not leverage computational and storage resources from the swarm members.We address the optimization of a swarm-powered distributed 3D mapping mission for a real-life humanitarian emergency response application through the exploitation of a swarm-powered ad hoc cloud. Producing the relevant 3D maps in a timely manner, even when the cloud connectivity is not available, is crucial to increase the chances of success of the operation. In this work, we present a mathematical programming heuristic based on decomposition and a variable neighborhood search heuristic to minimize the completion time of the 3D reconstruction process necessary in such missions. Our computational results reveal that the proposed heuristics either quickly reach optimality or improve the best known solutions for almost all tested realistic instances comprising up to 1000 images and fifteen drones

DROP: Dimensionality Reduction Optimization for Time Series

Dimensionality reduction is a critical step in scaling machine learning pipelines. Principal component analysis (PCA) is a standard tool for dimensionality reduction, but performing PCA over a full dataset can be prohibitively expensive. As a result, theoretical work has studied the effectiveness of iterative, stochastic PCA methods that operate over data samples. However, termination conditions for stochastic PCA either execute for a predetermined number of iterations, or until convergence of the solution, frequently sampling too many or too few datapoints for end-to-end runtime improvements. We show how accounting for downstream analytics operations during DR via PCA allows stochastic methods to efficiently terminate after operating over small (e.g., 1%) subsamples of input data, reducing whole workload runtime. Leveraging this, we propose DROP, a DR optimizer that enables speedups of up to 5x over Singular-Value-Decomposition-based PCA techniques, and exceeds conventional approaches like FFT and PAA by up to 16x in end-to-end workloads

Fuzzy multi-criteria simulated evolution for nurse re-rostering

Abstract: In a fuzzy environment where the decision making involves multiple criteria, fuzzy multi-criteria decision making approaches are a viable option. The nurse re-rostering problem is a typical complex problem situation, where scheduling decisions should consider fuzzy human preferences, such as nurse preferences, decision maker’s choices, and patient expectations. For effective nurse schedules, fuzzy theoretic evaluation approaches have to be used to incorporate the fuzzy human preferences and choices. The present study seeks to develop a fuzzy multi-criteria simulated evolution approach for the nurse re-rostering problem. Experimental results show that the fuzzy multi-criteria approach has a potential to solve large scale problems within reasonable computation times