4,852 research outputs found
Grammar-based Representation and Identification of Dynamical Systems
In this paper we propose a novel approach to identify dynamical systems. The
method estimates the model structure and the parameters of the model
simultaneously, automating the critical decisions involved in identification
such as model structure and complexity selection. In order to solve the
combined model structure and model parameter estimation problem, a new
representation of dynamical systems is proposed. The proposed representation is
based on Tree Adjoining Grammar, a formalism that was developed from linguistic
considerations. Using the proposed representation, the identification problem
can be interpreted as a multi-objective optimization problem and we propose a
Evolutionary Algorithm-based approach to solve the problem. A benchmark example
is used to demonstrate the proposed approach. The results were found to be
comparable to that obtained by state-of-the-art non-linear system
identification methods, without making use of knowledge of the system
description.Comment: Submitted to European Control Conference (ECC) 201
Decision Making in the Medical Domain: Comparing the Effectiveness of GP-Generated Fuzzy Intelligent Structures
ABSTRACT: In this work, we examine the effectiveness of two intelligent models in medical domains. Namely, we apply grammar-guided genetic programming to produce fuzzy intelligent structures, such as fuzzy rule-based systems and fuzzy Petri nets, in medical data mining tasks. First, we use two context-free grammars to describe fuzzy rule-based systems and fuzzy Petri nets with genetic programming. Then, we apply cellular encoding in order to express the fuzzy Petri nets with arbitrary size and topology. The models are examined thoroughly in four real-world medical data sets. Results are presented in detail and the competitive advantages and drawbacks of the selected methodologies are discussed, in respect to the nature of each application domain. Conclusions are drawn on the effectiveness and efficiency of the presented approach
Utterance Selection Model of Language Change
We present a mathematical formulation of a theory of language change. The
theory is evolutionary in nature and has close analogies with theories of
population genetics. The mathematical structure we construct similarly has
correspondences with the Fisher-Wright model of population genetics, but there
are significant differences. The continuous time formulation of the model is
expressed in terms of a Fokker-Planck equation. This equation is exactly
soluble in the case of a single speaker and can be investigated analytically in
the case of multiple speakers who communicate equally with all other speakers
and give their utterances equal weight. Whilst the stationary properties of
this system have much in common with the single-speaker case, time-dependent
properties are richer. In the particular case where linguistic forms can become
extinct, we find that the presence of many speakers causes a two-stage
relaxation, the first being a common marginal distribution that persists for a
long time as a consequence of ultimate extinction being due to rare
fluctuations.Comment: 21 pages, 17 figure
Developing and applying heterogeneous phylogenetic models with XRate
Modeling sequence evolution on phylogenetic trees is a useful technique in
computational biology. Especially powerful are models which take account of the
heterogeneous nature of sequence evolution according to the "grammar" of the
encoded gene features. However, beyond a modest level of model complexity,
manual coding of models becomes prohibitively labor-intensive. We demonstrate,
via a set of case studies, the new built-in model-prototyping capabilities of
XRate (macros and Scheme extensions). These features allow rapid implementation
of phylogenetic models which would have previously been far more
labor-intensive. XRate's new capabilities for lineage-specific models,
ancestral sequence reconstruction, and improved annotation output are also
discussed. XRate's flexible model-specification capabilities and computational
efficiency make it well-suited to developing and prototyping phylogenetic
grammar models. XRate is available as part of the DART software package:
http://biowiki.org/DART .Comment: 34 pages, 3 figures, glossary of XRate model terminolog
PonyGE2: Grammatical Evolution in Python
Grammatical Evolution (GE) is a population-based evolutionary algorithm,
where a formal grammar is used in the genotype to phenotype mapping process.
PonyGE2 is an open source implementation of GE in Python, developed at UCD's
Natural Computing Research and Applications group. It is intended as an
advertisement and a starting-point for those new to GE, a reference for
students and researchers, a rapid-prototyping medium for our own experiments,
and a Python workout. As well as providing the characteristic genotype to
phenotype mapping of GE, a search algorithm engine is also provided. A number
of sample problems and tutorials on how to use and adapt PonyGE2 have been
developed.Comment: 8 pages, 4 figures, submitted to the 2017 GECCO Workshop on
Evolutionary Computation Software Systems (EvoSoft
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