Energy-Efficient Streaming Using Non-volatile Memory

The disk and the DRAM in a typical mobile system consume a significant fraction (up to 30%) of the total system energy. To save on storage energy, the DRAM should be small and the disk should be spun down for long periods of time. We show that this can be achieved for predominantly streaming workloads by connecting the disk to the DRAM via a large non-volatile memory (NVM). We refer to this as the NVM-based architecture (NVMBA); the conventional architecture with only a DRAM and a disk is referred to as DRAMBA. The NVM in the NVMBA acts as a traffic reshaper from the disk to the DRAM. The total system costs are balanced, since the cost increase due to adding the NVM is compensated by the decrease in DRAM cost. We analyze the energy saving of NVMBA, with NAND flash memory serving as NVM, relative to DRAMBA with respect to (1) the streaming demand, (2) the disk form factor, (3) the best-effort provision, and (4) the stream location on the disk. We present a worst-case analysis of the reliability of the disk drive and the flash memory, and show that a small flash capacity is sufficient to operate the system over a year at negligible cost. Disk lifetime is superior to flash, so that is of no concern

Efficient Logging in Non-Volatile Memory by Exploiting Coherency Protocols

Non-volatile memory (NVM) technologies such as PCM, ReRAM and STT-RAM allow processors to directly write values to persistent storage at speeds that are significantly faster than previous durable media such as hard drives or SSDs. Many applications of NVM are constructed on a logging subsystem, which enables operations to appear to execute atomically and facilitates recovery from failures. Writes to NVM, however, pass through a processor's memory system, which can delay and reorder them and can impair the correctness and cost of logging algorithms. Reordering arises because of out-of-order execution in a CPU and the inter-processor cache coherence protocol. By carefully considering the properties of these reorderings, this paper develops a logging protocol that requires only one round trip to non-volatile memory while avoiding expensive computations. We show how to extend the logging protocol to building a persistent set (hash map) that also requires only a single round trip to non-volatile memory for insertion, updating, or deletion

Disaggregating non-volatile memory for throughput-oriented genomics workloads

Massive exploitation of next-generation sequencing technologies requires dealing with both: huge amounts of data and complex bioinformatics pipelines. Computing architectures have evolved to deal with these problems, enabling approaches that were unfeasible years ago: accelerators and Non-Volatile Memories (NVM) are becoming widely used to enhance the most demanding workloads. However, bioinformatics workloads are usually part of bigger pipelines with different and dynamic needs in terms of resources. The introduction of Software Defined Infrastructures (SDI) for data centers provides roots to dramatically increase the efficiency in the management of infrastructures. SDI enables new ways to structure hardware resources through disaggregation, and provides new hardware composability and sharing mechanisms to deploy workloads in more flexible ways. In this paper we study a state-of-the-art genomics application, SMUFIN, aiming to address the challenges of future HPC facilities.This work is partially supported by the European Research Council (ERC) under the EU Horizon 2020 programme (GA 639595), the Spanish Ministry of Economy, Industry and Competitivity (TIN2015-65316-P) and the Generalitat de Catalunya (2014-SGR-1051).Peer ReviewedPostprint (author's final draft

Making non-volatile memory programmable

Byte-addressable, non-volatile memory (NVM) is emerging as a revolutionary memory technology that provides persistence, near-DRAM performance, and scalable capacity. By using NVM, applications can directly create and manipulate durable data in place without the need for serialization out to SSDs. Ideally, through NVM, persistent applications will be able to maintain crash-consistency at a minimal cost. However, before this is possible, improvements must be made at both the hardware and software level to support persistent applications. Currently, software support for NVM places too high of a burden on the developer, introducing many opportunities for mistakes while also being too rigid for compiler optimizations. Likewise, at the hardware level, too little information is passed to the processor about the instruction-level ordering requirements of persistent applications; this forces the hardware to require the use of coarse fences, which significantly slow down execution. To help realize the promise of NVM, this thesis proposes both new software and hardware support that make NVM programmable. From the software side, this thesis proposes a new NVM programming model which relieves the programmer from performing much of the accounting work in persistent applications, instead relying on the runtime to perform error-prone tasks. Specifically, within the proposed model, the user only needs to provide minimal markings to identify the persistent data set and to ensure data is updated in a crash-consistent manner. Given this new NVM programming model, this thesis next presents an implementation of the model in Java. I call my implementation AutoPersist and build my support into the Maxine research Java Virtual Machine (JVM). In this thesis I describe how the JVM can be changed to support the proposed NVM programming model, including adding new Java libraries, adding new JVM runtime features, and augmenting the behavior of existing Java bytecodes. In addition to being easy-to-use, another advantage of the proposed model is that it is amenable to compiler optimizations. In this thesis I highlight two profile-guided optimizations: eagerly allocating objects directly into NVM and speculatively pruning control flow to only include expected-to-be taken paths. I also describe how to apply these optimizations to AutoPersist and show they have a substantial performance impact. While designing AutoPersist, I often observed that dependency information known by the compiler cannot be passed down to the underlying hardware; instead, the compiler must insert coarse-grain fences to enforce needed dependencies. This is because current instruction set architectures (ISA) cannot describe arbitrary instruction-level execution ordering constraints. To fix this limitation, I introduce the Execution Dependency Extension (EDE), and describe how EDE can be added to an existing ISA as well as be implemented in current processor pipelines. Overall, emerging NVM technologies can deliver programmer-friendly high performance. However, for this to happen, both software and hardware improvements are necessary. This thesis takes steps to address current the software and hardware gaps: I propose new software support to assist in the development of persistent applications and also introduce new instructions which allow for arbitrary instruction-level dependencies to be conveyed and enforced by the underlying hardware. With these improvements, hopefully the dream of programmable high-performance NVM is one step closer to being realized

Passive solid state microdosimeter with electronic readout

Apparatus and method for qualitatively and quantitatively analyzing a complex radiation field are provided. A passive microdosimetry detector device records the energy deposition of incident radiation using an array of microstructure non-volatile memory devices. Each microstructure non-volatile memory device is capable of storing a predetermined initial charge without requiring a power source. A radiation particle incident to a microstructure non-volatile memory device is termed an event . Each such event may generate a charge within a sensitive volume defined by the microstructure non-volatile memory device. The charge generated within the sensitive volume alters the stored initial charge by an amount falling within a range corresponding to the energy deposited by certain particle types. Data corresponding to such charge alterations for a plurality of microstructure non-volatile memory devices within an array of such devices are presented to a qualitative analyzing device. The qualitative analyzing device converts the data to a spectral analysis of the incident radiation field by applying ICRP-recommended weighting factors to individual events or approximations thereof

Algorithm-Directed Crash Consistence in Non-Volatile Memory for HPC

Fault tolerance is one of the major design goals for HPC. The emergence of non-volatile memories (NVM) provides a solution to build fault tolerant HPC. Data in NVM-based main memory are not lost when the system crashes because of the non-volatility nature of NVM. However, because of volatile caches, data must be logged and explicitly flushed from caches into NVM to ensure consistence and correctness before crashes, which can cause large runtime overhead. In this paper, we introduce an algorithm-based method to establish crash consistence in NVM for HPC applications. We slightly extend application data structures or sparsely flush cache blocks, which introduce ignorable runtime overhead. Such extension or cache flushing allows us to use algorithm knowledge to \textit{reason} data consistence or correct inconsistent data when the application crashes. We demonstrate the effectiveness of our method for three algorithms, including an iterative solver, dense matrix multiplication, and Monte-Carlo simulation. Based on comprehensive performance evaluation on a variety of test environments, we demonstrate that our approach has very small runtime overhead (at most 8.2\% and less than 3\% in most cases), much smaller than that of traditional checkpoint, while having the same or less recomputation cost.Comment: 12 page