5,584 research outputs found
Robust Cardiac Motion Estimation using Ultrafast Ultrasound Data: A Low-Rank-Topology-Preserving Approach
Cardiac motion estimation is an important diagnostic tool to detect heart
diseases and it has been explored with modalities such as MRI and conventional
ultrasound (US) sequences. US cardiac motion estimation still presents
challenges because of the complex motion patterns and the presence of noise. In
this work, we propose a novel approach to estimate the cardiac motion using
ultrafast ultrasound data. -- Our solution is based on a variational
formulation characterized by the L2-regularized class. The displacement is
represented by a lattice of b-splines and we ensure robustness by applying a
maximum likelihood type estimator. While this is an important part of our
solution, the main highlight of this paper is to combine a low-rank data
representation with topology preservation. Low-rank data representation
(achieved by finding the k-dominant singular values of a Casorati Matrix
arranged from the data sequence) speeds up the global solution and achieves
noise reduction. On the other hand, topology preservation (achieved by
monitoring the Jacobian determinant) allows to radically rule out distortions
while carefully controlling the size of allowed expansions and contractions.
Our variational approach is carried out on a realistic dataset as well as on a
simulated one. We demonstrate how our proposed variational solution deals with
complex deformations through careful numerical experiments. While maintaining
the accuracy of the solution, the low-rank preprocessing is shown to speed up
the convergence of the variational problem. Beyond cardiac motion estimation,
our approach is promising for the analysis of other organs that experience
motion.Comment: 15 pages, 10 figures, Physics in Medicine and Biology, 201
Video Interpolation using Optical Flow and Laplacian Smoothness
Non-rigid video interpolation is a common computer vision task. In this paper
we present an optical flow approach which adopts a Laplacian Cotangent Mesh
constraint to enhance the local smoothness. Similar to Li et al., our approach
adopts a mesh to the image with a resolution up to one vertex per pixel and
uses angle constraints to ensure sensible local deformations between image
pairs. The Laplacian Mesh constraints are expressed wholly inside the optical
flow optimization, and can be applied in a straightforward manner to a wide
range of image tracking and registration problems. We evaluate our approach by
testing on several benchmark datasets, including the Middlebury and Garg et al.
datasets. In addition, we show application of our method for constructing 3D
Morphable Facial Models from dynamic 3D data
Medical imaging analysis with artificial neural networks
Given that neural networks have been widely reported in the research community of medical imaging, we provide a focused literature survey on recent neural network developments in computer-aided diagnosis, medical image segmentation and edge detection towards visual content analysis, and medical image registration for its pre-processing and post-processing, with the aims of increasing awareness of how neural networks can be applied to these areas and to provide a foundation for further research and practical development. Representative techniques and algorithms are explained in detail to provide inspiring examples illustrating: (i) how a known neural network with fixed structure and training procedure could be applied to resolve a medical imaging problem; (ii) how medical images could be analysed, processed, and characterised by neural networks; and (iii) how neural networks could be expanded further to resolve problems relevant to medical imaging. In the concluding section, a highlight of comparisons among many neural network applications is included to provide a global view on computational intelligence with neural networks in medical imaging
A Low-Dimensional Representation for Robust Partial Isometric Correspondences Computation
Intrinsic isometric shape matching has become the standard approach for pose
invariant correspondence estimation among deformable shapes. Most existing
approaches assume global consistency, i.e., the metric structure of the whole
manifold must not change significantly. While global isometric matching is well
understood, only a few heuristic solutions are known for partial matching.
Partial matching is particularly important for robustness to topological noise
(incomplete data and contacts), which is a common problem in real-world 3D
scanner data. In this paper, we introduce a new approach to partial, intrinsic
isometric matching. Our method is based on the observation that isometries are
fully determined by purely local information: a map of a single point and its
tangent space fixes an isometry for both global and the partial maps. From this
idea, we develop a new representation for partial isometric maps based on
equivalence classes of correspondences between pairs of points and their
tangent spaces. From this, we derive a local propagation algorithm that find
such mappings efficiently. In contrast to previous heuristics based on RANSAC
or expectation maximization, our method is based on a simple and sound
theoretical model and fully deterministic. We apply our approach to register
partial point clouds and compare it to the state-of-the-art methods, where we
obtain significant improvements over global methods for real-world data and
stronger guarantees than previous heuristic partial matching algorithms.Comment: 17 pages, 12 figure
Diffeomorphic demons using normalized mutual information, evaluation on multimodal brain MR images
The demons algorithm is a fast non-parametric non-rigid registration method. In recent years great efforts have been made to improve the approach; the state of the art version yields symmetric inverse-consistent largedeformation diffeomorphisms. However, only limited work has explored inter-modal similarity metrics, with no practical evaluation on multi-modality data. We present a diffeomorphic demons implementation using the analytical gradient of Normalised Mutual Information (NMI) in a conjugate gradient optimiser. We report the first qualitative and quantitative assessment of the demons for inter-modal registration. Experiments to spatially normalise real MR images, and to recover simulated deformation fields, demonstrate (i) similar accuracy from NMI-demons and classical demons when the latter may be used, and (ii) similar accuracy for NMI-demons on T1w-T1w and T1w-T2w registration, demonstrating its potential in multi-modal scenarios
A tree-topology preserving pairing for 3D/2D registration
Information Processing in Computer-Assisted Interventions (IPCAI) 2015 Special IssueInternational audiencePurpose: Fusing pre-operative and intra-operative information into a single space aims at taking advantage of two complementary modalities and necessitates a step of registration that must provide good alignment and relevant correspondences. This paper addresses both purposes in the case of 3D/2D vessel tree matching. Method: We propose a registration algorithm endorsing this vascular tree nature by providing a pairing procedure that preserves the tree topology and by integrating this pairing into an iterative algorithm maintaining pairing coherence. In addition, we define two complementary error measures quantifying the resulting alignment error and pairing error. Both are based on manual ground-truth that is independent of the type of transformation to retrieve. Results: Experiments were conducted on a database of 63 clinical cases, evaluating robustness and accuracy of our approach with respect to the iterative closest point algorithm. Conclusion: The proposed method exhibits good results both in term of pairing and alignment as well as low sensitivity to rotations to be compensated (up to 30 degrees)
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