Deep network with score level fusion and inference-based transfer learning to recognize leaf blight and fruit rot diseases of eggplant

Eggplant is a popular vegetable crop. Eggplant yields can be affected by various diseases. Automatic detection and recognition of diseases is an important step toward improving crop yields. In this paper, we used a two-stream deep fusion architecture, employing CNN-SVM and CNN-Softmax pipelines, along with an inference model to infer the disease classes. A dataset of 2284 images was sourced from primary (using a consumer RGB camera) and secondary sources (the internet). The dataset contained images of nine eggplant diseases. Experimental results show that the proposed method achieved better accuracy and lower false-positive results compared to other deep learning methods (such as VGG16, Inception V3, VGG 19, MobileNet, NasNetMobile, and ResNet50)

Intelligent Personalized Searching

Search engine is a very useful tool for almost everyone nowadays. People use search engine for the purpose of searching about their personal finance, restaurants, electronic products, and travel information, to name a few. As helpful as search engines are in terms of providing information, they can also manipulate people behaviors because most people trust online information without a doubt. Furthermore, ordinary users usually only pay attention the highest-ranking pages from the search results. Knowing this predictable user behavior, search engine providers such as Google and Yahoo take advantage and use it as a tool for them to generate profit. Search engine providers are enterprise companies with the goal to generate profit, and an easy way for them to do so is by ranking up particular web pages to promote the product or services of their own or their paid customers. The results from search engine could be misleading. The goal of this project is to filter the bias from search results and provide best matches on behalf of users’ interest

A Deep Learning-Based System (Microscan) for the Identification of Pollen Development Stages and Its Application to Obtaining Doubled Haploid Lines in Eggplant

[EN] The development of double haploids (DHs) is a straightforward path for obtaining pure lines but has multiple bottlenecks. Among them is the determination of the optimal stage of pollen induction for androgenesis. In this work, we developed Microscan, a deep learning-based system for the detection and recognition of the stages of pollen development. In a first experiment, the algorithm was developed adapting the RetinaNet predictive model using microspores of different eggplant accessions as samples. A mean average precision of 86.30% was obtained. In a second experiment, the anther range to be cultivated in vitro was determined in three eggplant genotypes by applying the Microscan system. Subsequently, they were cultivated following two different androgenesis protocols (Cb and E6). The response was only observed in the anther size range predicted by Microscan, obtaining the best results with the E6 protocol. The plants obtained were characterized by flow cytometry and with the Single Primer Enrichment Technology high-throughput genotyping platform, obtaining a high rate of confirmed haploid and double haploid plants. Microscan has been revealed as a tool for the high-throughput efficient analysis of microspore samples, as it has been exemplified in eggplant by providing an increase in the yield of DHs production.This research was funded by the Spanish Ministerio de Ciencia, Innovacion y Universidades, Agencia Estatal de Investigacion and Fondo Europeo de Desarrollo Regional (grant RTI-2018-094592-B-I00 from MCIU/AEI/FEDER, UE). This work was also undertaken as part of the initiative "Adapting Agriculture to Climate Change: Collecting, Protecting and Preparing Crop Wild Relatives", which is supported by the Government of Norway. The project is managed by the Global Crop Diversity Trust with the Millennium Seed Bank of the Royal Botanic Gardens, Kew, and implemented in partnership with national and international gene banks and plant breeding institutes around the world. For further information, see the project website: http://www.cwrdiversity.org/.The Spanish Ministerio de Educacion, Cultura y Deporte funded a predoctoral fellowship granted to Edgar Garcia-Fortea (FPU17/02389).García-Fortea, E.; García-Pérez, A.; Gimeno -Páez, E.; Sánchez-Gimeno, A.; Vilanova Navarro, S.; Prohens Tomás, J.; Pastor-Calle, D. (2020). A Deep Learning-Based System (Microscan) for the Identification of Pollen Development Stages and Its Application to Obtaining Doubled Haploid Lines in Eggplant. Biology. 9(9):1-19. https://doi.org/10.3390/biology9090272S11999Prohens, J., Gramazio, P., Plazas, M., Dempewolf, H., Kilian, B., Díez, M. J., … Vilanova, S. (2017). 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The potential use of non destructive optical-based techniques for early detection of chilling injury and freshness in horticultural commodities

The increasing concern and awareness of the modern consumer regarding food including fruits and vegetables, has been oriented the research in the food industry to develop rapid, reliable and cost effective methods for the evaluation of food products including the traceability of the product history in terms of storage conditions. Since the conventional destructive analysis methods are time consuming, expensive, targeted and labor intensive, non-destructive methods are gaining significant popularity. These methods are being utilized by the food industry for the early detection of fruits defects, for the classification of fruits and vegetables on the basis of variety, maturity stage, storage history and origin and for the prediction of main internal constituents. Since chilling injury (CI) occurrence is a major problem for chilling sensitive products, as tropical and sub-tropical fruit and vegetables, prompt detection of CI is still a challenge to be addressed. The incorrect management of the temperature during storage and distribution causes significant losses and wastes in the horticultural food chain, which can be prevented if the product is promptly reported to the correct temperature, before that damages become irreversible. For this reason, rapid and fast methods for early detection of CI are needed. In the first work of this thesis, non-destructive optical techniques were applied for the early detection of chilling injury in eggplants. Eggplant fruit is a chilling sensitive vegetable that should be stored at temperatures above 12°C. For the estimation of CI, fruit were stored at 2°C (chilling temperature) and at 12°C (safe storage temperature) for a time span of 10 days. CIE L*a*b* measurements, reflectance data in the wavelength range 360–740 nm, Fourier Transformed (FT)-NIR spectra (800–2777 nm) and hyperspectral images in the visible (400–1000 nm) and near infrared (900–1700 nm) spectral range were acquired for each fruit. Partial least square discriminant analysis (PLSDA), supervised vector machine (SVM) and k-nearest neighbor (kNN) were applied to classify fruit according to the storage temperature. According to the results, although CI symptoms started being evident only after the 4th day of storage at 2°C, it was possible to discriminate fruit earlier using FT-NIR spectral data with the SVM classifier (100 and 92% non-error-rate (NER) in calibration and cross validation, respectively, in the whole data set. Color data and PLSDA classification possessed relatively lower accuracy as compared to SVM. These results depicted a good potential of for the non-destructive techniques for the early detection of CI in eggplants. Similarly, in the second experimental part of the thesis, hyperspectral imaging in Vis-NIR and SWIR regions combined with chemometric techniques were used for the early estimation of chilling injury in bell peppers. PLSDA models accompanied by wavelength selection algorithms were used for this purpose, with accuracies ranging from 81% and 87% non-error-rate (NER) based on the wavelength ranges used and variables selected. PLSR models were developed for the prediction of days of cold storage resulting in R²CV = 0.92 for full range and R²CV = 0.79 using selected variables. Based on the results, it was concluded, that Vis-NIR hyperspectral imaging is a reliable option for on-line classification of fresh versus refrigerated fruit and for identifying early incidence of CI. Inspired by the results obtained from previous studies a third study regarded the use of nondestructive techniques for the estimation of freshness of eggplants using color, spectral and hyperspectral measurements. To this aim, fruit were stored at 12°C for 10 days. Fruit were left at room temperature (20°C) for 1 day after sampling which was done with a 2-day interval, simulating one-day of shelf life in the market. PLSR models were developed using the spectral and hyperspectral data and the storage days, allowing safe assessment of the freshness of the fruits along with the utilization of SPA for variable reduction. The results depicted strong correlation between storage days, FT-NIR spectra and the hyperspectral data in the Vis-NIR range with accuracies as high as RC> 0.98, RCV> 0.94, RMSEC < 0.4 and RMSECV< 0.8, followed by lower accuracies using color data. The results of this study may set the basis to develop a protocol allowing a rapid screening and sorting of eggplants according to their postharvest freshness either upon handling in a distribution center or even upon the reception in the retail market. In the last work, as a deeper investigation, the effect of temperature and storage time on the FTNIR spectra was statistically investigated using ANOVA-simultaneous component analysis (ASCA) on eggplant fruit as a crop model. Also in this case, fruit were stored at 2 and 12 °C, for 10 days. Sensorial analysis, electrolyte leakage (EL), weight loss and firmness were used, as the reference measurements for CI. ASCA model proved that both temperature, duration of storage, and their interaction had a significant effect on the spectral changes over time of eggplant fruit. Followed by ASCA, PLSDA was conducted on the data to discriminate fruit based on the storage temperature. In this case, only the WL significant in the ASCA approach for temperature were considered, allowing to reach 87.4±2.7% as estimated by a repeated double-cross-validation procedure. The outcomes of all these studied manifested a promising, non-invasive, and fast tool for the control of CI and the prevention of food losses due to the incorrect management of the temperature in the horticultural food chain

Applications of Image Processing for Grading Agriculture products

Image processing in the context of Computer vision, is one of the renowned topic of computer science and engineering, which has played a vital role in automation. It has eased in revealing unknown fact in medical science, remote sensing, and many other domains. Digital image processing along with classification and neural network algorithms has enabled grading of various things. One of prominent area of its application is classification of agriculture products and especially grading of seed or cereals and its cultivars. Grading and sorting system allows maintaining the consistency, uniformity and depletion of time. This paper highlights various methods used for grading various agriculture products. DOI: 10.17762/ijritcc2321-8169.15036

Self-Supervised and Controlled Multi-Document Opinion Summarization

We address the problem of unsupervised abstractive summarization of collections of user generated reviews with self-supervision and control. We propose a self-supervised setup that considers an individual document as a target summary for a set of similar documents. This setting makes training simpler than previous approaches by relying only on standard log-likelihood loss. We address the problem of hallucinations through the use of control codes, to steer the generation towards more coherent and relevant summaries.Finally, we extend the Transformer architecture to allow for multiple reviews as input. Our benchmarks on two datasets against graph-based and recent neural abstractive unsupervised models show that our proposed method generates summaries with a superior quality and relevance.This is confirmed in our human evaluation which focuses explicitly on the faithfulness of generated summaries We also provide an ablation study, which shows the importance of the control setup in controlling hallucinations and achieve high sentiment and topic alignment of the summaries with the input reviews.Comment: 18 pages including 5 pages appendi

Texture-based latent space disentanglement for enhancement of a training dataset for ANN-based classification of fruit and vegetables

The capability of Convolutional Neural Networks (CNNs) for sparse representation has significant application to complex tasks like Representation Learning (RL). However, labelled datasets of sufficient size for learning this representation are not easily obtainable. The unsupervised learning capability of Variational Autoencoders (VAEs) and Generative Adversarial Networks (GANs) provide a promising solution to this issue through their capacity to learn representations for novel data samples and classification tasks. In this research, a texture-based latent space disentanglement technique is proposed to enhance learning of representations for novel data samples. A comparison is performed among different VAEs and GANs with the proposed approach for synthesis of new data samples. Two different VAE architectures are considered, a single layer dense VAE and a convolution based VAE, to compare the effectiveness of different architectures for learning of the representations. The GANs are selected based on the distance metric for disjoint distribution divergence estimation of complex representation learning tasks. The proposed texture-based disentanglement has been shown to provide a significant improvement for disentangling the process of representation learning by conditioning the random noise and synthesising texture rich images of fruit and vegetables

Multiclass insect counting through deep learning-based density maps estimation

The use of digital technologies and artificial intelligence techniques for the automation of some visual assessment processes in agriculture is currently a reality. Image-based, and recently deep learning-based systems are being used in several applications. Main challenge of these applications is to achieve a correct performance in real field conditions over images that are usually acquired with mobile devices and thus offer limited quality. Plagues control is a problem to be tackled in the field. Pest management strategies relies on the identification of the level of infestation. This degree of infestation is established through a counting task manually done by the field researcher so far. Current models were not able to appropriately count due to the small size of the insects and on the last year we presented a density map based algorithm that superseded state of the art methods for a single insect type. In this paper, we extend previous work into a multiclass and multi-stadia approach. Concretely, the proposed algorithm has been tested in two use cases: on the one hand, it counts five different types of adult individuals over multiple crop leaves; and on the other hand, it identifies four different stages for immatures over 2-cm leaf disks. In these leaf disks, some of the species are in different stadia being some of them micron size and difficult to be identified even for the non-expert user. The proposed method achieves good results in both cases. The model for counting adult insects in a leaf achieves a RMSE ranging from 0.89 to 4.47, MAE ranging from 0.40 to 2.15, and R2 ranging from 0.86 to 0.91 for 4 different species in its adult phase (BEMITA, FRANOC, MYZUPE and APHIGO) that may appear together in the same leaf. Besides, for FRANOC, two stadia nymphs and adults are considered. The model developed for counting BEMITA immatures in 2-cm disks obtains R2 values up to 0.98 for big nymphs. This solution was embedded in a docker and can be accessed through an app via REST service in mobile devices. It has been tested in the wild under real conditions in different locations worldwide and over 14 different crops.The authors would like to thank all field researchers that generated the dataset, carried out the annotation process, performed the validation in the wild, and in general, supported the work in Tecnalia and BASF specially to Javier Romero, Carlos Javier Jim ́enez, Amaia Ortiz, Aitor Alvarez and Jone Echazarra