1,247 research outputs found

    Advanced framework for epilepsy detection through image-based EEG signal analysis

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    BackgroundRecurrent and unpredictable seizures characterize epilepsy, a neurological disorder affecting millions worldwide. Epilepsy diagnosis is crucial for timely treatment and better outcomes. Electroencephalography (EEG) time-series data analysis is essential for epilepsy diagnosis and surveillance. Complex signal processing methods used in traditional EEG analysis are computationally demanding and difficult to generalize across patients. Researchers are using machine learning to improve epilepsy detection, particularly visual feature extraction from EEG time-series data.ObjectiveThis study examines the application of a Gramian Angular Summation Field (GASF) approach for the analysis of EEG signals. Additionally, it explores the utilization of image features, specifically the Scale-Invariant Feature Transform (SIFT) and Oriented FAST and Rotated BRIEF (ORB) techniques, for the purpose of epilepsy detection in EEG data.MethodsThe proposed methodology encompasses the transformation of EEG signals into images based on GASF, followed by the extraction of features utilizing SIFT and ORB techniques, and ultimately, the selection of relevant features. A state-of-the-art machine learning classifier is employed to classify GASF images into two categories: normal EEG patterns and focal EEG patterns. Bern-Barcelona EEG recordings were used to test the proposed method.ResultsThis method classifies EEG signals with 96% accuracy using SIFT features and 94% using ORB features. The Random Forest (RF) classifier surpasses state-of-the-art approaches in precision, recall, F1-score, specificity, and Area Under Curve (AUC). The Receiver Operating Characteristic (ROC) curve shows that Random Forest outperforms Support Vector Machine (SVM) and k-Nearest Neighbors (k-NN) classifiers.SignificanceThe suggested method has many advantages over time-series EEG data analysis and machine learning classifiers used in epilepsy detection studies. A novel image-based preprocessing pipeline using GASF for robust image synthesis and SIFT and ORB for feature extraction is presented here. The study found that the suggested method can accurately discriminate between normal and focal EEG signals, improving patient outcomes through early and accurate epilepsy diagnosis

    Air Quality Research Using Remote Sensing

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    Air pollution is a worldwide environmental hazard that poses serious consequences not only for human health and the climate but also for agriculture, ecosystems, and cultural heritage, among other factors. According to the WHO, there are 8 million premature deaths every year as a result of exposure to ambient air pollution. In addition, more than 90% of the world’s population live in areas where the air quality is poor, exceeding the recommended limits. On the other hand, air pollution and the climate co-influence one another through complex physicochemical interactions in the atmosphere that alter the Earth’s energy balance and have implications for climate change and the air quality. It is important to measure specific atmospheric parameters and pollutant compound concentrations, monitor their variations, and analyze different scenarios with the aim of assessing the air pollution levels and developing early warning and forecast systems as a means of improving the air quality and safeguarding public health. Such measures can also form part of efforts to achieve a reduction in the number of air pollution casualties and mitigate climate change phenomena. This book contains contributions focusing on remote sensing techniques for evaluating air quality, including the use of in situ data, modeling approaches, and the synthesis of different instrumentations and techniques. The papers published in this book highlight the importance and relevance of air quality studies and the potential of remote sensing, particularly that conducted from Earth observation platforms, to shed light on this topic

    Using hydrological models and digital soil mapping for the assessment and management of catchments: A case study of the Nyangores and Ruiru catchments in Kenya (East Africa)

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    Human activities on land have a direct and cumulative impact on water and other natural resources within a catchment. This land-use change can have hydrological consequences on the local and regional scales. Sound catchment assessment is not only critical to understanding processes and functions but also important in identifying priority management areas. The overarching goal of this doctoral thesis was to design a methodological framework for catchment assessment (dependent upon data availability) and propose practical catchment management strategies for sustainable water resources management. The Nyangores and Ruiru reservoir catchments located in Kenya, East Africa were used as case studies. A properly calibrated Soil and Water Assessment Tool (SWAT) hydrologic model coupled with a generic land-use optimization tool (Constrained Multi-Objective Optimization of Land-use Allocation-CoMOLA) was applied to identify and quantify functional trade-offs between environmental sustainability and food production in the ‘data-available’ Nyangores catchment. This was determined using a four-dimension objective function defined as (i) minimizing sediment load, (ii) maximizing stream low flow and (iii and iv) maximizing the crop yields of maize and soybeans, respectively. Additionally, three different optimization scenarios, represented as i.) agroforestry (Scenario 1), ii.) agroforestry + conservation agriculture (Scenario 2) and iii.) conservation agriculture (Scenario 3), were compared. For the data-scarce Ruiru reservoir catchment, alternative methods using digital soil mapping of soil erosion proxies (aggregate stability using Mean Weight Diameter) and spatial-temporal soil loss analysis using empirical models (the Revised Universal Soil Loss Equation-RUSLE) were used. The lack of adequate data necessitated a data-collection phase which implemented the conditional Latin Hypercube Sampling. This sampling technique reduced the need for intensive soil sampling while still capturing spatial variability. The results revealed that for the Nyangores catchment, adoption of both agroforestry and conservation agriculture (Scenario 2) led to the smallest trade-off amongst the different objectives i.e. a 3.6% change in forests combined with 35% change in conservation agriculture resulted in the largest reduction in sediment loads (78%), increased low flow (+14%) and only slightly decreased crop yields (3.8% for both maize and soybeans). Therefore, the advanced use of hydrologic models with optimization tools allows for the simultaneous assessment of different outputs/objectives and is ideal for areas with adequate data to properly calibrate the model. For the Ruiru reservoir catchment, digital soil mapping (DSM) of aggregate stability revealed that susceptibility to erosion exists for cropland (food crops), tea and roadsides, which are mainly located in the eastern part of the catchment, as well as deforested areas on the western side. This validated that with limited soil samples and the use of computing power, machine learning and freely available covariates, DSM can effectively be applied in data-scarce areas. Moreover, uncertainty in the predictions can be incorporated using prediction intervals. The spatial-temporal analysis exhibited that bare land (which has the lowest areal proportion) was the largest contributor to erosion. Two peak soil loss periods corresponding to the two rainy periods of March–May and October–December were identified. Thus, yearly soil erosion risk maps misrepresent the true dimensions of soil loss with averages disguising areas of low and high potential. Also, a small portion of the catchment can be responsible for a large proportion of the total erosion. For both catchments, agroforestry (combining both the use of trees and conservation farming) is the most feasible catchment management strategy (CMS) for solving the major water quantity and quality problems. Finally, the key to thriving catchments aiming at both sustainability and resilience requires urgent collaborative action by all stakeholders. The necessary stakeholders in both Nyangores and Ruiru reservoir catchments must be involved in catchment assessment in order to identify the catchment problems, mitigation strategies/roles and responsibilities while keeping in mind that some risks need to be shared and negotiated, but so will the benefits.:TABLE OF CONTENTS DECLARATION OF CONFORMITY........................................................................ i DECLARATION OF INDEPENDENT WORK AND CONSENT ............................. ii LIST OF PAPERS ................................................................................................. iii ACKNOWLEDGEMENTS ..................................................................................... iv THESIS AT A GLANCE ......................................................................................... v SUMMARY ............................................................................................................ vi List of Figures......................................................................................................... x List of Tables........................................................................................................... x ABBREVIATION..................................................................................................... xi PART A: SYNTHESIS 1. INTRODUCTION ............................................................................................... 1 1.1 Catchment management ...................................................................................1 1.2 Tools to support catchment assessment and management ..............................4 1.3 Catchment management strategies (CMSs)......................................................9 1.4 Concept and research objectives.......................................................................11 2. MATERIAL AND METHODS................................................................................15 2.1. STUDY AREA ..................................................................................................15 2.1.1. Nyangores catchment ...................................................................................15 2.1.2. Ruiru reservoir catchment .............................................................................17 2.2. Using SWAT conceptual model and land-use optimization ..............................19 2.3. Using soil erosion proxies and empirical models ..............................................21 3. RESULTS AND DISCUSSION..............................................................................24 3.1. Assessing multi-metric calibration performance using the SWAT model...........25 3.2. Land-use optimization using SWAT-CoMOLA for the Nyangores catchment. ..26 3.3. Digital soil mapping of soil aggregate stability ..................................................28 3.4. Spatio-temporal analysis using the revised universal soil loss equation (RUSLE) 29 4. CRITICAL ASSESSMENT OF THE METHODS USED ......................................31 4.1. Assessing suitability of data for modelling and overcoming data challenges...31 4.2. Selecting catchment management strategies based on catchment assessment . 35 5. CONCLUSION AND RECOMMENDATIONS ....................................................36 6. REFERENCES ............................ .....................................................................38 PART B: PAPERS PAPER I .................................................................................................................47 PAPER II ................................................................................................................59 PAPER III ...............................................................................................................74 PAPER IV ...............................................................................................................8

    20th SC@RUG 2023 proceedings 2022-2023

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    Modelling tree biomass using direct and additive methods with point cloud deep learning in a temperate mixed forest

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    ABSTRACT: Airborne laser scanning (ALS) data has been widely used for total aboveground tree biomass (AGB) modelling, however, there is less research focusing on estimating specific tree biomass components (wood, branches, bark, and foliage). Knowledge about these biomass components is essential for carbon accounting, understanding forest nutrient cycling, and other applications. In this study, we compare additive AGB estimation (sum of estimated components) with direct AGB estimation using deep neural network (DNN) and random forest (RF) models. We utilise two point cloud DNNs: point-based Dynamic Graph Convolutional Neural Network (DGCNN) and Octree-based Convolutional Neural Network (OCNN). DNN and RF models were trained using a dataset comprised of 2336 sample plots from a mixed temperate forest in New Brunswick, Canada. Results indicate that additive AGB models perform similarly to direct models in terms of coefficient of determination (R2) and root-mean square error (RMSE), and reduced the mean absolute percentage error (MAPE) by 22% on average. Compared to RF, the DNNs provided a small improvement in performance, with OCNN explaining 5% more variation in the data (R2 = 0.76) and reducing MAPE by 20% on average. Overall, this study showcases the effectiveness of additive tree AGB models and highlights the potential of DNNs for enhanced AGB estimation. To further improve DNN performance, we recommend using larger training datasets, implementing hyperparameter optimization, and incorporating additional data such as multispectral imagery

    The little skate genome and the evolutionary emergence of wing-like fins

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    Skates are cartilaginous fish whose body plan features enlarged wing-like pectoral fins, enabling them to thrive in benthic environments1,2. However, the molecular underpinnings of this unique trait remain unclear. Here we investigate the origin of this phenotypic innovation by developing the little skate Leucoraja erinacea as a genomically enabled model. Analysis of a high-quality chromosome-scale genome sequence for the little skate shows that it preserves many ancestral jawed vertebrate features compared with other sequenced genomes, including numerous ancient microchromosomes. Combining genome comparisons with extensive regulatory datasets in developing fins—including gene expression, chromatin occupancy and three-dimensional conformation—we find skate-specific genomic rearrangements that alter the three-dimensional regulatory landscape of genes that are involved in the planar cell polarity pathway. Functional inhibition of planar cell polarity signalling resulted in a reduction in anterior fin size, confirming that this pathway is a major contributor to batoid fin morphology. We also identified a fin-specific enhancer that interacts with several hoxa genes, consistent with the redeployment of hox gene expression in anterior pectoral fins, and confirmed its potential to activate transcription in the anterior fin using zebrafish reporter assays. Our findings underscore the central role of genome reorganization and regulatory variation in the evolution of phenotypes, shedding light on the molecular origin of an enigmatic trait

    Beam scanning by liquid-crystal biasing in a modified SIW structure

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    A fixed-frequency beam-scanning 1D antenna based on Liquid Crystals (LCs) is designed for application in 2D scanning with lateral alignment. The 2D array environment imposes full decoupling of adjacent 1D antennas, which often conflicts with the LC requirement of DC biasing: the proposed design accommodates both. The LC medium is placed inside a Substrate Integrated Waveguide (SIW) modified to work as a Groove Gap Waveguide, with radiating slots etched on the upper broad wall, that radiates as a Leaky-Wave Antenna (LWA). This allows effective application of the DC bias voltage needed for tuning the LCs. At the same time, the RF field remains laterally confined, enabling the possibility to lay several antennas in parallel and achieve 2D beam scanning. The design is validated by simulation employing the actual properties of a commercial LC medium

    Synthetic Aperture Radar (SAR) Meets Deep Learning

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    This reprint focuses on the application of the combination of synthetic aperture radars and depth learning technology. It aims to further promote the development of SAR image intelligent interpretation technology. A synthetic aperture radar (SAR) is an important active microwave imaging sensor, whose all-day and all-weather working capacity give it an important place in the remote sensing community. Since the United States launched the first SAR satellite, SAR has received much attention in the remote sensing community, e.g., in geological exploration, topographic mapping, disaster forecast, and traffic monitoring. It is valuable and meaningful, therefore, to study SAR-based remote sensing applications. In recent years, deep learning represented by convolution neural networks has promoted significant progress in the computer vision community, e.g., in face recognition, the driverless field and Internet of things (IoT). Deep learning can enable computational models with multiple processing layers to learn data representations with multiple-level abstractions. This can greatly improve the performance of various applications. This reprint provides a platform for researchers to handle the above significant challenges and present their innovative and cutting-edge research results when applying deep learning to SAR in various manuscript types, e.g., articles, letters, reviews and technical reports

    20th SC@RUG 2023 proceedings 2022-2023

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