Improving Image Reconstruction for Digital Breast Tomosynthesis

Digital breast tomosynthesis (DBT) has been developed to reduce the issue of overlapping tissue in conventional 2-D mammography for breast cancer screening and diagnosis. In the DBT procedure, the patient’s breast is compressed with a paddle and a sequence of x-ray projections is taken within a small angular range. Tomographic reconstruction algorithms are then applied to these projections, generating tomosynthesized image slices of the breast, such that radiologists can read the breast slice by slice. Studies have shown that DBT can reduce both false-negative diagnoses of breast cancer and false-positive recalls compared to mammography alone. This dissertation focuses on improving image quality for DBT reconstruction. Chapter I briefly introduces the concept of DBT and the inspiration of my study. Chapter II covers the background of my research including the concept of image reconstruction, the geometry of our experimental DBT system and figures of merit for image quality. Chapter III introduces our study of the segmented separable footprint (SG) projector. By taking into account the finite size of detector element, the SG projector improves the accuracy of forward projections in iterative image reconstruction. Due to the more efficient access to memory, the SG projector is also faster than the traditional ray-tracing (RT) projector. We applied the SG projector to regular and subpixel reconstructions and demonstrated its effectiveness. Chapter IV introduces a new DBT reconstruction method with detector blur and correlated noise modeling, called the SQS-DBCN algorithm. The SQS-DBCN algorithm is able to significantly enhance microcalcifications (MC) in DBT while preserving the appearance of the soft tissue and mass margin. Comparisons between the SQS-DBCN algorithm and several modified versions of the SQS-DBCN algorithm indicate the importance of modeling different components of the system physics at the same time. Chapter V investigates truncated projection artifact (TPA) removal algorithms. Among the three algorithms we proposed, the pre-reconstruction-based projection view (PV) extrapolation method provides the best performance. Possible improvements of the other two TPA removal algorithms have been discussed. Chapter VI of this dissertation examines the effect of source blur on DBT reconstruction. Our analytical calculation demonstrates that the point spread function (PSF) of source blur is highly shift-variant. We used CatSim to simulate digital phantoms. Analysis on the reconstructed images demonstrates that a typical finite-sized focal spot (~ 0.3 mm) will not affect the image quality if the x-ray tube is stationary during the data acquisition. For DBT systems with continuous-motion data acquisition, the motion of the x-ray tube is the main cause of the effective source blur and will cause loss in the contrast of objects. Therefore modeling the source blur for these DBT systems could potentially improve the reconstructed image quality. The final chapter of this dissertation discusses a few future studies that are inspired by my PhD research.PHDElectrical Engineering: SystemsUniversity of Michigan, Horace H. Rackham School of Graduate Studieshttps://deepblue.lib.umich.edu/bitstream/2027.42/144059/1/jiabei_1.pd

Super-Resolution Restoration of MISR Images Using the UCL MAGiGAN System

High spatial resolution Earth observation imagery is considered desirable for many scientific and commercial applications. Given repeat multi-angle imagery, an imaging instrument with a specified spatial resolution, we can use image processing and deep learning techniques to enhance the spatial resolution. In this paper, we introduce the University College London (UCL) MAGiGAN super-resolution restoration (SRR) system based on multi-angle feature restoration and deep SRR networks. We explore the application of MAGiGAN SRR to a set of 9 MISR red band images (275 m) to produce up to a factor of 3.75 times resolution enhancement. We show SRR results over four different test sites containing different types of image content including urban and rural targets, sea ice and a cloud field. Different image metrics are introduced to assess the overall SRR performance, and these are employed to compare the SRR results with the original MISR input images and higher resolution Landsat images, where available. Significant resolution improvement over various types of image content is demonstrated and the potential of SRR for different scientific application is discussed

Digital Image Processing

This book presents several recent advances that are related or fall under the umbrella of 'digital image processing', with the purpose of providing an insight into the possibilities offered by digital image processing algorithms in various fields. The presented mathematical algorithms are accompanied by graphical representations and illustrative examples for an enhanced readability. The chapters are written in a manner that allows even a reader with basic experience and knowledge in the digital image processing field to properly understand the presented algorithms. Concurrently, the structure of the information in this book is such that fellow scientists will be able to use it to push the development of the presented subjects even further

Model-Based Iterative Reconstruction in Cone-Beam Computed Tomography: Advanced Models of Imaging Physics and Prior Information

Cone-beam computed tomography (CBCT) represents a rapidly developing imaging modality that provides three-dimensional (3D) volumetric images with sub-millimeter spatial resolution and soft-tissue visibility from a single gantry rotation. CBCT tends to have small footprint, mechanical simplicity, open geometry, and low cost compared to conventional diagnostic CT. Because of these features, CBCT has been used in a variety of specialty diagnostic applications, image-guided radiation therapy (on-board CBCT), and surgical guidance (e.g., C-arm based CBCT). However, the current generation of CBCT systems face major challenges in low-contrast, soft-tissue image quality – for example, in the detection of acute intracranial hemorrhage (ICH), which requires a fairly high level of image uniformity, spatial resolution, and contrast resolution. Moreover, conventional approaches in both diagnostic and image-guided interventions that involve a series of imaging studies fail to leverage the wealth of patient-specific anatomical information available from previous scans. Leveraging the knowledge gained from prior images holds the potential for major gains in image quality and dose reduction. Model-based iterative reconstruction (MBIR) attempts to make more efficient use of the measurement data by incorporating a forward model of physical detection processes. Moreover, MBIR allows incorporation of various forms of prior information into image reconstruction, ranging from image smoothness and sharpness to patient-specific anatomical information. By leveraging such advantages, MBIR has demonstrated improved tradeoffs between image quality and radiation dose in multi-detector CT in the past decade and has recently shown similar promise in CBCT. However, the full potential of MBIR in CBCT is yet to be realized. This dissertation explores the capabilities of MBIR in improving image quality (especially low-contrast, soft-tissue image quality) and reducing radiation dose in CBCT. The presented work encompasses new MBIR methods that: i) modify the noise model in MBIR to compensate for noise amplification from artifact correction; ii) design regularization by explicitly incorporating task-based imaging performance as the objective; iii) mitigate truncation effects in a computationally efficient manner; iv) leverage a wealth of patient-specific anatomical information from a previously acquired image; and v) prospectively estimate the optimal amount of prior image information for accurate admission of specific anatomical changes. Specific clinical challenges are investigated in the detection of acute ICH and surveillance of lung nodules. The results show that MBIR can substantially improve low-contrast, soft-tissue image quality in CBCT and enable dose reduction techniques in sequential imaging studies. The thesis demonstrates that novel MBIR methods hold strong potential to overcome conventional barriers to CBCT image quality and open new clinical applications that would benefit from high-quality 3D imaging

Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries

This two-volume set LNCS 12962 and 12963 constitutes the thoroughly refereed proceedings of the 7th International MICCAI Brainlesion Workshop, BrainLes 2021, as well as the RSNA-ASNR-MICCAI Brain Tumor Segmentation (BraTS) Challenge, the Federated Tumor Segmentation (FeTS) Challenge, the Cross-Modality Domain Adaptation (CrossMoDA) Challenge, and the challenge on Quantification of Uncertainties in Biomedical Image Quantification (QUBIQ). These were held jointly at the 23rd Medical Image Computing for Computer Assisted Intervention Conference, MICCAI 2020, in September 2021. The 91 revised papers presented in these volumes were selected form 151 submissions. Due to COVID-19 pandemic the conference was held virtually. This is an open access book

Computational methods for the analysis of functional 4D-CT chest images.

Medical imaging is an important emerging technology that has been intensively used in the last few decades for disease diagnosis and monitoring as well as for the assessment of treatment effectiveness. Medical images provide a very large amount of valuable information that is too huge to be exploited by radiologists and physicians. Therefore, the design of computer-aided diagnostic (CAD) system, which can be used as an assistive tool for the medical community, is of a great importance. This dissertation deals with the development of a complete CAD system for lung cancer patients, which remains the leading cause of cancer-related death in the USA. In 2014, there were approximately 224,210 new cases of lung cancer and 159,260 related deaths. The process begins with the detection of lung cancer which is detected through the diagnosis of lung nodules (a manifestation of lung cancer). These nodules are approximately spherical regions of primarily high density tissue that are visible in computed tomography (CT) images of the lung. The treatment of these lung cancer nodules is complex, nearly 70% of lung cancer patients require radiation therapy as part of their treatment. Radiation-induced lung injury is a limiting toxicity that may decrease cure rates and increase morbidity and mortality treatment. By finding ways to accurately detect, at early stage, and hence prevent lung injury, it will have significant positive consequences for lung cancer patients. The ultimate goal of this dissertation is to develop a clinically usable CAD system that can improve the sensitivity and specificity of early detection of radiation-induced lung injury based on the hypotheses that radiated lung tissues may get affected and suffer decrease of their functionality as a side effect of radiation therapy treatment. These hypotheses have been validated by demonstrating that automatic segmentation of the lung regions and registration of consecutive respiratory phases to estimate their elasticity, ventilation, and texture features to provide discriminatory descriptors that can be used for early detection of radiation-induced lung injury. The proposed methodologies will lead to novel indexes for distinguishing normal/healthy and injured lung tissues in clinical decision-making. To achieve this goal, a CAD system for accurate detection of radiation-induced lung injury that requires three basic components has been developed. These components are the lung fields segmentation, lung registration, and features extraction and tissue classification. This dissertation starts with an exploration of the available medical imaging modalities to present the importance of medical imaging in today’s clinical applications. Secondly, the methodologies, challenges, and limitations of recent CAD systems for lung cancer detection are covered. This is followed by introducing an accurate segmentation methodology of the lung parenchyma with the focus of pathological lungs to extract the volume of interest (VOI) to be analyzed for potential existence of lung injuries stemmed from the radiation therapy. After the segmentation of the VOI, a lung registration framework is introduced to perform a crucial and important step that ensures the co-alignment of the intra-patient scans. This step eliminates the effects of orientation differences, motion, breathing, heart beats, and differences in scanning parameters to be able to accurately extract the functionality features for the lung fields. The developed registration framework also helps in the evaluation and gated control of the radiotherapy through the motion estimation analysis before and after the therapy dose. Finally, the radiation-induced lung injury is introduced, which combines the previous two medical image processing and analysis steps with the features estimation and classification step. This framework estimates and combines both texture and functional features. The texture features are modeled using the novel 7th-order Markov Gibbs random field (MGRF) model that has the ability to accurately models the texture of healthy and injured lung tissues through simultaneously accounting for both vertical and horizontal relative dependencies between voxel-wise signals. While the functionality features calculations are based on the calculated deformation fields, obtained from the 4D-CT lung registration, that maps lung voxels between successive CT scans in the respiratory cycle. These functionality features describe the ventilation, the air flow rate, of the lung tissues using the Jacobian of the deformation field and the tissues’ elasticity using the strain components calculated from the gradient of the deformation field. Finally, these features are combined in the classification model to detect the injured parts of the lung at an early stage and enables an earlier intervention

Molecular Imaging

The present book gives an exceptional overview of molecular imaging. Practical approach represents the red thread through the whole book, covering at the same time detailed background information that goes very deep into molecular as well as cellular level. Ideas how molecular imaging will develop in the near future present a special delicacy. This should be of special interest as the contributors are members of leading research groups from all over the world