Automatic Segmentation Measuring Function for Cardiac MR-Left Ventricle (LV) Images

Automatic segmentation approaches are a desirable solution for Endocardium (inner) and Epicardium (outer) contours delineation using cardiac magnetic resonance left ventricle (CMR-LV) short axis images. The Level Set Model (LSM) and Variational LSM (VLSM) is the state-of-the-art in detecting the inner and outer contour for medical images. However, in CMR-LV images segmentation the LSM and VLSM are facing with the issue of re-initialisation because of irregular circle shape. In this paper, we developed an automatic segmentation measuring function based on statistical formulation to solve the re-initialisation issues in huge set of data images. The sign Euclidean distance function successfully classified the negative (inner contour) and positive (outer contour) features. The Fuzzy C mean interaction operator intersects the high membership degree that initialises the centre point. The experiments were conducted using the Sunnybrook and Pusat Juntung Hospital Umum Sarawak (PJHUS) cardiac datasets. This paper aims at developing a distance function to guide the automatic segmentation for LV contours and also to reduce segmentation error

3D Model Assisted Image Segmentation

The problem of segmenting a given image into coherent regions is important in Computer Vision and many industrial applications require segmenting a known object into its components. Examples include identifying individual parts of a component for proces

An improved model for joint segmentation and registration based on linear curvature smoother

Image segmentation and registration are two of the most challenging tasks in medical imaging. They are closely related because both tasks are often required simultaneously. In this article, we present an improved variational model for a joint segmentation and registration based on active contour without edges and the linear curvature model. The proposed model allows large deformation to occur by solving in this way the difficulties other jointly performed segmentation and registration models have in case of encountering multiple objects into an image or their highly dependence on the initialisation or the need for a pre-registration step, which has an impact on the segmentation results. Through different numerical results, we show that the proposed model gives correct registration results when there are different features inside the object to be segmented or features that have clear boundaries but without fine details in which the old model would not be able to cope. </jats:p

Visual Object Tracking: The Initialisation Problem

Model initialisation is an important component of object tracking. Tracking algorithms are generally provided with the first frame of a sequence and a bounding box (BB) indicating the location of the object. This BB may contain a large number of background pixels in addition to the object and can lead to parts-based tracking algorithms initialising their object models in background regions of the BB. In this paper, we tackle this as a missing labels problem, marking pixels sufficiently away from the BB as belonging to the background and learning the labels of the unknown pixels. Three techniques, One-Class SVM (OC-SVM), Sampled-Based Background Model (SBBM) (a novel background model based on pixel samples), and Learning Based Digital Matting (LBDM), are adapted to the problem. These are evaluated with leave-one-video-out cross-validation on the VOT2016 tracking benchmark. Our evaluation shows both OC-SVMs and SBBM are capable of providing a good level of segmentation accuracy but are too parameter-dependent to be used in real-world scenarios. We show that LBDM achieves significantly increased performance with parameters selected by cross validation and we show that it is robust to parameter variation.Comment: 15th Conference on Computer and Robot Vision (CRV 2018). Source code available at https://github.com/georgedeath/initialisation-proble

Left-ventricle myocardium segmentation using a coupled level-set with a priori knowledge

This paper presents a coupled level-set segmentation of the myocardium of the left ventricle of the heart using a priori information. From a fast marching initialisation, two fronts representing the endocardium and epicardium boundaries of the left ventricle are evolved as the zero level-set of a higher dimension function. We introduce a novel and robust stopping term using both gradient and region-based information. The segmentation is supervised both with a coupling function and using a probabilistic model built from training instances. The robustness of the segmentation scheme is evaluated by performing a segmentation on four unseen data-sets containing high variation and the performance of the segmentation is quantitatively assessed

DeepCut: Object Segmentation from Bounding Box Annotations using Convolutional Neural Networks

In this paper, we propose DeepCut, a method to obtain pixelwise object segmentations given an image dataset labelled with bounding box annotations. It extends the approach of the well-known GrabCut method to include machine learning by training a neural network classifier from bounding box annotations. We formulate the problem as an energy minimisation problem over a densely-connected conditional random field and iteratively update the training targets to obtain pixelwise object segmentations. Additionally, we propose variants of the DeepCut method and compare those to a naive approach to CNN training under weak supervision. We test its applicability to solve brain and lung segmentation problems on a challenging fetal magnetic resonance dataset and obtain encouraging results in terms of accuracy

On Using Physical Analogies for Feature and Shape Extraction in Computer Vision

There is a rich literature of approaches to image feature extraction in computer vision. Many sophisticated approaches exist for low- and high-level feature extraction but can be complex to implement with parameter choice guided by experimentation, but impeded by speed of computation. We have developed new ways to extract features based on notional use of physical paradigms, with parameterisation that is more familiar to a scientifically-trained user, aiming to make best use of computational resource. We describe how analogies based on gravitational force can be used for low-level analysis, whilst analogies of water flow and heat can be deployed to achieve high-level smooth shape detection. These new approaches to arbitrary shape extraction are compared with standard state-of-art approaches by curve evolution. There is no comparator operator to our use of gravitational force. We also aim to show that the implementation is consistent with the original motivations for these techniques and so contend that the exploration of physical paradigms offers a promising new avenue for new approaches to feature extraction in computer vision

Autonomous monitoring of cliff nesting seabirds using computer vision

In this paper we describe a proposed system for automatic visual monitoring of seabird populations. Image sequences of cliff face nesting sites are captured using time-lapse digital photography. We are developing image processing software which is designed to automatically interpret these images, determine the number of birds present, and monitor activity. We focus primarily on the the development of low-level image processing techniques to support this goal. We first describe our existing work in video processing, and show how it is suitable for this problem domain. Image samples from a particular nest site are presented, and used to describe the associated challenges. We conclude by showing how we intend to develop our work to construct a distributed system capable of simultaneously monitoring a number of sites in the same locality

Temporally coherent 4D reconstruction of complex dynamic scenes

This paper presents an approach for reconstruction of 4D temporally coherent models of complex dynamic scenes. No prior knowledge is required of scene structure or camera calibration allowing reconstruction from multiple moving cameras. Sparse-to-dense temporal correspondence is integrated with joint multi-view segmentation and reconstruction to obtain a complete 4D representation of static and dynamic objects. Temporal coherence is exploited to overcome visual ambiguities resulting in improved reconstruction of complex scenes. Robust joint segmentation and reconstruction of dynamic objects is achieved by introducing a geodesic star convexity constraint. Comparative evaluation is performed on a variety of unstructured indoor and outdoor dynamic scenes with hand-held cameras and multiple people. This demonstrates reconstruction of complete temporally coherent 4D scene models with improved nonrigid object segmentation and shape reconstruction.Comment: To appear in The IEEE Conference on Computer Vision and Pattern Recognition (CVPR) 2016 . Video available at: https://www.youtube.com/watch?v=bm_P13_-Ds

General Dynamic Scene Reconstruction from Multiple View Video

This paper introduces a general approach to dynamic scene reconstruction from multiple moving cameras without prior knowledge or limiting constraints on the scene structure, appearance, or illumination. Existing techniques for dynamic scene reconstruction from multiple wide-baseline camera views primarily focus on accurate reconstruction in controlled environments, where the cameras are fixed and calibrated and background is known. These approaches are not robust for general dynamic scenes captured with sparse moving cameras. Previous approaches for outdoor dynamic scene reconstruction assume prior knowledge of the static background appearance and structure. The primary contributions of this paper are twofold: an automatic method for initial coarse dynamic scene segmentation and reconstruction without prior knowledge of background appearance or structure; and a general robust approach for joint segmentation refinement and dense reconstruction of dynamic scenes from multiple wide-baseline static or moving cameras. Evaluation is performed on a variety of indoor and outdoor scenes with cluttered backgrounds and multiple dynamic non-rigid objects such as people. Comparison with state-of-the-art approaches demonstrates improved accuracy in both multiple view segmentation and dense reconstruction. The proposed approach also eliminates the requirement for prior knowledge of scene structure and appearance