26,500 research outputs found
Fast Search for Dynamic Multi-Relational Graphs
Acting on time-critical events by processing ever growing social media or
news streams is a major technical challenge. Many of these data sources can be
modeled as multi-relational graphs. Continuous queries or techniques to search
for rare events that typically arise in monitoring applications have been
studied extensively for relational databases. This work is dedicated to answer
the question that emerges naturally: how can we efficiently execute a
continuous query on a dynamic graph? This paper presents an exact subgraph
search algorithm that exploits the temporal characteristics of representative
queries for online news or social media monitoring. The algorithm is based on a
novel data structure called the Subgraph Join Tree (SJ-Tree) that leverages the
structural and semantic characteristics of the underlying multi-relational
graph. The paper concludes with extensive experimentation on several real-world
datasets that demonstrates the validity of this approach.Comment: SIGMOD Workshop on Dynamic Networks Management and Mining (DyNetMM),
201
Performance and scalability of indexed subgraph query processing methods
Graph data management systems have become very popular
as graphs are the natural data model for many applications.
One of the main problems addressed by these systems is subgraph
query processing; i.e., given a query graph, return all
graphs that contain the query. The naive method for processing
such queries is to perform a subgraph isomorphism
test against each graph in the dataset. This obviously does
not scale, as subgraph isomorphism is NP-Complete. Thus,
many indexing methods have been proposed to reduce the
number of candidate graphs that have to underpass the subgraph
isomorphism test. In this paper, we identify a set of
key factors-parameters, that influence the performance of
related methods: namely, the number of nodes per graph,
the graph density, the number of distinct labels, the number
of graphs in the dataset, and the query graph size. We then
conduct comprehensive and systematic experiments that analyze
the sensitivity of the various methods on the values of
the key parameters. Our aims are twofold: first to derive
conclusions about the algorithms’ relative performance, and,
second, to stress-test all algorithms, deriving insights as to
their scalability, and highlight how both performance and
scalability depend on the above factors. We choose six wellestablished
indexing methods, namely Grapes, CT-Index,
GraphGrepSX, gIndex, Tree+∆, and gCode, as representative
approaches of the overall design space, including the
most recent and best performing methods. We report on
their index construction time and index size, and on query
processing performance in terms of time and false positive
ratio. We employ both real and synthetic datasets. Specifi-
cally, four real datasets of different characteristics are used:
AIDS, PDBS, PCM, and PPI. In addition, we generate a
large number of synthetic graph datasets, empowering us to
systematically study the algorithms’ performance and scalability
versus the aforementioned key parameters
Inductive queries for a drug designing robot scientist
It is increasingly clear that machine learning algorithms need to be integrated in an iterative scientific discovery loop, in which data is queried repeatedly by means of inductive queries and where the computer provides guidance to the experiments that are being performed. In this chapter, we summarise several key challenges in achieving this integration of machine learning and data mining algorithms in methods for the discovery of Quantitative Structure Activity Relationships (QSARs). We introduce the concept of a robot scientist, in which all steps of the discovery process are automated; we discuss the representation of molecular data such that knowledge discovery tools can analyse it, and we discuss the adaptation of machine learning and data mining algorithms to guide QSAR experiments
Sequence queries on temporal graphs
Graphs that evolve over time are called temporal graphs. They can be used to describe and represent real-world networks, including transportation networks, social networks, and communication networks, with higher fidelity and accuracy. However, research is still limited on how to manage large scale temporal graphs and execute queries over these graphs efficiently and effectively. This thesis investigates the problems of temporal graph data management related to node and edge sequence queries. In temporal graphs, nodes and edges can evolve over time. Therefore, sequence queries on nodes and edges can be key components in managing temporal graphs. In this thesis, the node sequence query decomposes into two parts: graph node similarity and subsequence matching. For node similarity, this thesis proposes a modified tree edit distance that is metric and polynomially computable and has a natural, intuitive interpretation. Note that the proposed node similarity works even for inter-graph nodes and therefore can be used for graph de-anonymization, network transfer learning, and cross-network mining, among other tasks. The subsequence matching query proposed in this thesis is a framework that can be adopted to index generic sequence and time-series data, including trajectory data and even DNA sequences for subsequence retrieval. For edge sequence queries, this thesis proposes an efficient storage and optimized indexing technique that allows for efficient retrieval of temporal subgraphs that satisfy certain temporal predicates. For this problem, this thesis develops a lightweight data management engine prototype that can support time-sensitive temporal graph analytics efficiently even on a single PC
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