2,390 research outputs found
Dictionary Learning-based Inpainting on Triangular Meshes
The problem of inpainting consists of filling missing or damaged regions in
images and videos in such a way that the filling pattern does not produce
artifacts that deviate from the original data. In addition to restoring the
missing data, the inpainting technique can also be used to remove undesired
objects. In this work, we address the problem of inpainting on surfaces through
a new method based on dictionary learning and sparse coding. Our method learns
the dictionary through the subdivision of the mesh into patches and rebuilds
the mesh via a method of reconstruction inspired by the Non-local Means method
on the computed sparse codes. One of the advantages of our method is that it is
capable of filling the missing regions and simultaneously removes noise and
enhances important features of the mesh. Moreover, the inpainting result is
globally coherent as the representation based on the dictionaries captures all
the geometric information in the transformed domain. We present two variations
of the method: a direct one, in which the model is reconstructed and restored
directly from the representation in the transformed domain and a second one,
adaptive, in which the missing regions are recreated iteratively through the
successive propagation of the sparse code computed in the hole boundaries,
which guides the local reconstructions. The second method produces better
results for large regions because the sparse codes of the patches are adapted
according to the sparse codes of the boundary patches. Finally, we present and
analyze experimental results that demonstrate the performance of our method
compared to the literature
Exact Geosedics and Shortest Paths on Polyhedral Surface
We present two algorithms for computing distances along a non-convex polyhedral surface. The first algorithm computes exact minimal-geodesic distances and the second algorithm combines these distances to compute exact shortest-path distances along the surface. Both algorithms have been extended to compute the exact minimalgeodesic paths and shortest paths. These algorithms have been implemented and validated on surfaces for which the correct solutions are known, in order to verify the accuracy and to measure the run-time performance, which is cubic or less for each algorithm. The exact-distance computations carried out by these algorithms are feasible for large-scale surfaces containing tens of thousands of vertices, and are a necessary component of near-isometric surface flattening methods that accurately transform curved manifolds into flat representations.National Institute for Biomedical Imaging and Bioengineering (R01 EB001550
3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries
Recent advances in electron microscopy have enabled the imaging of single
cells in 3D at nanometer length scale resolutions. An uncharted frontier for in
silico biology is the ability to simulate cellular processes using these
observed geometries. Enabling such simulations requires watertight meshing of
electron micrograph images into 3D volume meshes, which can then form the basis
of computer simulations of such processes using numerical techniques such as
the Finite Element Method. In this paper, we describe the use of our recently
rewritten mesh processing software, GAMer 2, to bridge the gap between poorly
conditioned meshes generated from segmented micrographs and boundary marked
tetrahedral meshes which are compatible with simulation. We demonstrate the
application of a workflow using GAMer 2 to a series of electron micrographs of
neuronal dendrite morphology explored at three different length scales and show
that the resulting meshes are suitable for finite element simulations. This
work is an important step towards making physical simulations of biological
processes in realistic geometries routine. Innovations in algorithms to
reconstruct and simulate cellular length scale phenomena based on emerging
structural data will enable realistic physical models and advance discovery at
the interface of geometry and cellular processes. We posit that a new frontier
at the intersection of computational technologies and single cell biology is
now open.Comment: 39 pages, 14 figures. High resolution figures and supplemental movies
available upon reques
Tetrahedral mesh improvement using moving mesh smoothing, lazy searching flips, and RBF surface reconstruction
Given a tetrahedral mesh and objective functionals measuring the mesh quality
which take into account the shape, size, and orientation of the mesh elements,
our aim is to improve the mesh quality as much as possible. In this paper, we
combine the moving mesh smoothing, based on the integration of an ordinary
differential equation coming from a given functional, with the lazy flip
technique, a reversible edge removal algorithm to modify the mesh connectivity.
Moreover, we utilize radial basis function (RBF) surface reconstruction to
improve tetrahedral meshes with curved boundary surfaces. Numerical tests show
that the combination of these techniques into a mesh improvement framework
achieves results which are comparable and even better than the previously
reported ones.Comment: Revised and improved versio
Detail-preserving and Content-aware Variational Multi-view Stereo Reconstruction
Accurate recovery of 3D geometrical surfaces from calibrated 2D multi-view
images is a fundamental yet active research area in computer vision. Despite
the steady progress in multi-view stereo reconstruction, most existing methods
are still limited in recovering fine-scale details and sharp features while
suppressing noises, and may fail in reconstructing regions with few textures.
To address these limitations, this paper presents a Detail-preserving and
Content-aware Variational (DCV) multi-view stereo method, which reconstructs
the 3D surface by alternating between reprojection error minimization and mesh
denoising. In reprojection error minimization, we propose a novel inter-image
similarity measure, which is effective to preserve fine-scale details of the
reconstructed surface and builds a connection between guided image filtering
and image registration. In mesh denoising, we propose a content-aware
-minimization algorithm by adaptively estimating the value and
regularization parameters based on the current input. It is much more promising
in suppressing noise while preserving sharp features than conventional
isotropic mesh smoothing. Experimental results on benchmark datasets
demonstrate that our DCV method is capable of recovering more surface details,
and obtains cleaner and more accurate reconstructions than state-of-the-art
methods. In particular, our method achieves the best results among all
published methods on the Middlebury dino ring and dino sparse ring datasets in
terms of both completeness and accuracy.Comment: 14 pages,16 figures. Submitted to IEEE Transaction on image
processin
Error-Bounded and Feature Preserving Surface Remeshing with Minimal Angle Improvement
The typical goal of surface remeshing consists in finding a mesh that is (1)
geometrically faithful to the original geometry, (2) as coarse as possible to
obtain a low-complexity representation and (3) free of bad elements that would
hamper the desired application. In this paper, we design an algorithm to
address all three optimization goals simultaneously. The user specifies desired
bounds on approximation error {\delta}, minimal interior angle {\theta} and
maximum mesh complexity N (number of vertices). Since such a desired mesh might
not even exist, our optimization framework treats only the approximation error
bound {\delta} as a hard constraint and the other two criteria as optimization
goals. More specifically, we iteratively perform carefully prioritized local
operators, whenever they do not violate the approximation error bound and
improve the mesh otherwise. In this way our optimization framework greedily
searches for the coarsest mesh with minimal interior angle above {\theta} and
approximation error bounded by {\delta}. Fast runtime is enabled by a local
approximation error estimation, while implicit feature preservation is obtained
by specifically designed vertex relocation operators. Experiments show that our
approach delivers high-quality meshes with implicitly preserved features and
better balances between geometric fidelity, mesh complexity and element quality
than the state-of-the-art.Comment: 14 pages, 20 figures. Submitted to IEEE Transactions on Visualization
and Computer Graphic
Multilevel Solvers for Unstructured Surface Meshes
Parameterization of unstructured surface meshes is of fundamental importance in many applications of digital geometry processing. Such parameterization approaches give rise to large and exceedingly ill-conditioned systems which are difficult or impossible to solve without the use of sophisticated multilevel preconditioning strategies. Since the underlying meshes are very fine to begin with, such multilevel preconditioners require mesh coarsening to build an appropriate hierarchy. In this paper we consider several strategies for the construction of hierarchies using ideas from mesh simplification algorithms used in the computer graphics literature. We introduce two novel hierarchy construction schemes and demonstrate their superior performance when used in conjunction with a multigrid preconditioner
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