Maximum A Posteriori Inference in Sum-Product Networks

Sum-product networks (SPNs) are a class of probabilistic graphical models that allow tractable marginal inference. However, the maximum a posteriori (MAP) inference in SPNs is NP-hard. We investigate MAP inference in SPNs from both theoretical and algorithmic perspectives. For the theoretical part, we reduce general MAP inference to its special case without evidence and hidden variables; we also show that it is NP-hard to approximate the MAP problem to $2^{n^\epsilon}$ for fixed $0 \leq \epsilon < 1$, where $n$ is the input size. For the algorithmic part, we first present an exact MAP solver that runs reasonably fast and could handle SPNs with up to 1k variables and 150k arcs in our experiments. We then present a new approximate MAP solver with a good balance between speed and accuracy, and our comprehensive experiments on real-world datasets show that it has better overall performance than existing approximate solvers

Approximation Complexity of Maximum A Posteriori Inference in Sum-Product Networks

We discuss the computational complexity of approximating maximum a posteriori inference in sum-product networks. We first show NP-hardness in trees of height two by a reduction from maximum independent set; this implies non-approximability within a sublinear factor. We show that this is a tight bound, as we can find an approximation within a linear factor in networks of height two. We then show that, in trees of height three, it is NP-hard to approximate the problem within a factor $2^{f(n)}$ for any sublinear function $f$ of the size of the input $n$. Again, this bound is tight, as we prove that the usual max-product algorithm finds (in any network) approximations within factor $2^{c \cdot n}$ for some constant $c < 1$. Last, we present a simple algorithm, and show that it provably produces solutions at least as good as, and potentially much better than, the max-product algorithm. We empirically analyze the proposed algorithm against max-product using synthetic and realistic networks.Comment: 18 page

Parametric Inference for Biological Sequence Analysis

One of the major successes in computational biology has been the unification, using the graphical model formalism, of a multitude of algorithms for annotating and comparing biological sequences. Graphical models that have been applied towards these problems include hidden Markov models for annotation, tree models for phylogenetics, and pair hidden Markov models for alignment. A single algorithm, the sum-product algorithm, solves many of the inference problems associated with different statistical models. This paper introduces the \emph{polytope propagation algorithm} for computing the Newton polytope of an observation from a graphical model. This algorithm is a geometric version of the sum-product algorithm and is used to analyze the parametric behavior of maximum a posteriori inference calculations for graphical models.Comment: 15 pages, 4 figures. See also companion paper "Tropical Geometry of Statistical Models" (q-bio.QM/0311009

Maximum Weight Matching via Max-Product Belief Propagation

Max-product "belief propagation" is an iterative, local, message-passing algorithm for finding the maximum a posteriori (MAP) assignment of a discrete probability distribution specified by a graphical model. Despite the spectacular success of the algorithm in many application areas such as iterative decoding, computer vision and combinatorial optimization which involve graphs with many cycles, theoretical results about both correctness and convergence of the algorithm are known in few cases (Weiss-Freeman Wainwright, Yeddidia-Weiss-Freeman, Richardson-Urbanke}. In this paper we consider the problem of finding the Maximum Weight Matching (MWM) in a weighted complete bipartite graph. We define a probability distribution on the bipartite graph whose MAP assignment corresponds to the MWM. We use the max-product algorithm for finding the MAP of this distribution or equivalently, the MWM on the bipartite graph. Even though the underlying bipartite graph has many short cycles, we find that surprisingly, the max-product algorithm always converges to the correct MAP assignment as long as the MAP assignment is unique. We provide a bound on the number of iterations required by the algorithm and evaluate the computational cost of the algorithm. We find that for a graph of size $n$, the computational cost of the algorithm scales as $O(n^3)$, which is the same as the computational cost of the best known algorithm. Finally, we establish the precise relation between the max-product algorithm and the celebrated {\em auction} algorithm proposed by Bertsekas. This suggests possible connections between dual algorithm and max-product algorithm for discrete optimization problems.Comment: In the proceedings of the 2005 IEEE International Symposium on Information Theor

Neighbourhood-consensus message passing and its potentials in image processing applications

In this paper, a novel algorithm for inference in Markov Random Fields (MRFs) is presented. Its goal is to find approximate maximum a posteriori estimates in a simple manner by combining neighbourhood influence of iterated conditional modes (ICM) and message passing of loopy belief propagation (LBP). We call the proposed method neighbourhood-consensus message passing because a single joint message is sent from the specified neighbourhood to the central node. The message, as a function of beliefs, represents the agreement of all nodes within the neighbourhood regarding the labels of the central node. This way we are able to overcome the disadvantages of reference algorithms, ICM and LBP. On one hand, more information is propagated in comparison with ICM, while on the other hand, the huge amount of pairwise interactions is avoided in comparison with LBP by working with neighbourhoods. The idea is related to the previously developed iterated conditional expectations algorithm. Here we revisit it and redefine it in a message passing framework in a more general form. The results on three different benchmarks demonstrate that the proposed technique can perform well both for binary and multi-label MRFs without any limitations on the model definition. Furthermore, it manifests improved performance over related techniques either in terms of quality and/or speed