The Hierarchic treatment of marine ecological information from spatial networks of benthic platforms

Measuring biodiversity simultaneously in different locations, at different temporal scales, and over wide spatial scales is of strategic importance for the improvement of our understanding of the functioning of marine ecosystems and for the conservation of their biodiversity. Monitoring networks of cabled observatories, along with other docked autonomous systems (e.g., Remotely Operated Vehicles [ROVs], Autonomous Underwater Vehicles [AUVs], and crawlers), are being conceived and established at a spatial scale capable of tracking energy fluxes across benthic and pelagic compartments, as well as across geographic ecotones. At the same time, optoacoustic imaging is sustaining an unprecedented expansion in marine ecological monitoring, enabling the acquisition of new biological and environmental data at an appropriate spatiotemporal scale. At this stage, one of the main problems for an effective application of these technologies is the processing, storage, and treatment of the acquired complex ecological information. Here, we provide a conceptual overview on the technological developments in the multiparametric generation, storage, and automated hierarchic treatment of biological and environmental information required to capture the spatiotemporal complexity of a marine ecosystem. In doing so, we present a pipeline of ecological data acquisition and processing in different steps and prone to automation. We also give an example of population biomass, community richness and biodiversity data computation (as indicators for ecosystem functionality) with an Internet Operated Vehicle (a mobile crawler). Finally, we discuss the software requirements for that automated data processing at the level of cyber-infrastructures with sensor calibration and control, data banking, and ingestion into large data portals.Peer ReviewedPostprint (published version

ORCA-SPOT: An Automatic Killer Whale Sound Detection Toolkit Using Deep Learning

Large bioacoustic archives of wild animals are an important source to identify reappearing communication patterns, which can then be related to recurring behavioral patterns to advance the current understanding of intra-specific communication of non-human animals. A main challenge remains that most large-scale bioacoustic archives contain only a small percentage of animal vocalizations and a large amount of environmental noise, which makes it extremely difficult to manually retrieve sufficient vocalizations for further analysis – particularly important for species with advanced social systems and complex vocalizations. In this study deep neural networks were trained on 11,509 killer whale (Orcinus orca) signals and 34,848 noise segments. The resulting toolkit ORCA-SPOT was tested on a large-scale bioacoustic repository – the Orchive – comprising roughly 19,000 hours of killer whale underwater recordings. An automated segmentation of the entire Orchive recordings (about 2.2 years) took approximately 8 days. It achieved a time-based precision or positive-predictive-value (PPV) of 93.2% and an area-under-the-curve (AUC) of 0.9523. This approach enables an automated annotation procedure of large bioacoustics databases to extract killer whale sounds, which are essential for subsequent identification of significant communication patterns. The code will be publicly available in October 2019 to support the application of deep learning to bioaoucstic research. ORCA-SPOT can be adapted to other animal species

A Comprehensive Review of AI-enabled Unmanned Aerial Vehicle: Trends, Vision , and Challenges

In recent years, the combination of artificial intelligence (AI) and unmanned aerial vehicles (UAVs) has brought about advancements in various areas. This comprehensive analysis explores the changing landscape of AI-powered UAVs and friendly computing in their applications. It covers emerging trends, futuristic visions, and the inherent challenges that come with this relationship. The study examines how AI plays a role in enabling navigation, detecting and tracking objects, monitoring wildlife, enhancing precision agriculture, facilitating rescue operations, conducting surveillance activities, and establishing communication among UAVs using environmentally conscious computing techniques. By delving into the interaction between AI and UAVs, this analysis highlights the potential for these technologies to revolutionise industries such as agriculture, surveillance practices, disaster management strategies, and more. While envisioning possibilities, it also takes a look at ethical considerations, safety concerns, regulatory frameworks to be established, and the responsible deployment of AI-enhanced UAV systems. By consolidating insights from research endeavours in this field, this review provides an understanding of the evolving landscape of AI-powered UAVs while setting the stage for further exploration in this transformative domain

Applications of deep learning in fish habitat monitoring: A tutorial and survey

Marine ecosystems and their fish habitats are becoming increasingly important due to their integral role in providing a valuable food source and conservation outcomes. Due to their remote and difficult to access nature, marine environments and fish habitats are often monitored using underwater cameras to record videos and images for understanding fish life and ecology, as well as for preserve the environment. There are currently many permanent underwater camera systems deployed at different places around the globe. In addition, there exists numerous studies that use temporary cameras to survey fish habitats. These cameras generate a massive volume of digital data, which cannot be efficiently analysed by current manual processing methods, which involve a human observer. Deep Learning (DL) is a cutting-edge Artificial Intelligence (AI) technology that has demonstrated unprecedented performance in analysing visual data. Despite its application to a myriad of domains, its use in underwater fish habitat monitoring remains under explored. In this paper, we provide a tutorial that covers the key concepts of DL, which help the reader grasp a high-level understanding of how DL works. The tutorial also explains a step-by-step procedure on how DL algorithms should be developed for challenging applications such as underwater fish monitoring. In addition, we provide a comprehensive survey of key deep learning techniques for fish habitat monitoring including classification, counting, localisation, and segmentation. Furthermore, we survey publicly available underwater fish datasets, and compare various DL techniques in the underwater fish monitoring domains. We also discuss some challenges and opportunities in the emerging field of deep learning for fish habitat processing. This paper is written to serve as a tutorial for marine scientists who would like to grasp a high-level understanding of DL, develop it for their applications by following our step-by-step tutorial, and see how it is evolving to facilitate their research efforts. At the same time, it is suitable for computer scientists who would like to survey state-of-the-art DL-based methodologies for fish habitat monitoring