Scalable Text and Link Analysis with Mixed-Topic Link Models

Many data sets contain rich information about objects, as well as pairwise relations between them. For instance, in networks of websites, scientific papers, and other documents, each node has content consisting of a collection of words, as well as hyperlinks or citations to other nodes. In order to perform inference on such data sets, and make predictions and recommendations, it is useful to have models that are able to capture the processes which generate the text at each node and the links between them. In this paper, we combine classic ideas in topic modeling with a variant of the mixed-membership block model recently developed in the statistical physics community. The resulting model has the advantage that its parameters, including the mixture of topics of each document and the resulting overlapping communities, can be inferred with a simple and scalable expectation-maximization algorithm. We test our model on three data sets, performing unsupervised topic classification and link prediction. For both tasks, our model outperforms several existing state-of-the-art methods, achieving higher accuracy with significantly less computation, analyzing a data set with 1.3 million words and 44 thousand links in a few minutes.Comment: 11 pages, 4 figure

Hierarchical relational models for document networks

We develop the relational topic model (RTM), a hierarchical model of both network structure and node attributes. We focus on document networks, where the attributes of each document are its words, that is, discrete observations taken from a fixed vocabulary. For each pair of documents, the RTM models their link as a binary random variable that is conditioned on their contents. The model can be used to summarize a network of documents, predict links between them, and predict words within them. We derive efficient inference and estimation algorithms based on variational methods that take advantage of sparsity and scale with the number of links. We evaluate the predictive performance of the RTM for large networks of scientific abstracts, web documents, and geographically tagged news.Comment: Published in at http://dx.doi.org/10.1214/09-AOAS309 the Annals of Applied Statistics (http://www.imstat.org/aoas/) by the Institute of Mathematical Statistics (http://www.imstat.org

Transforming Graph Representations for Statistical Relational Learning

Relational data representations have become an increasingly important topic due to the recent proliferation of network datasets (e.g., social, biological, information networks) and a corresponding increase in the application of statistical relational learning (SRL) algorithms to these domains. In this article, we examine a range of representation issues for graph-based relational data. Since the choice of relational data representation for the nodes, links, and features can dramatically affect the capabilities of SRL algorithms, we survey approaches and opportunities for relational representation transformation designed to improve the performance of these algorithms. This leads us to introduce an intuitive taxonomy for data representation transformations in relational domains that incorporates link transformation and node transformation as symmetric representation tasks. In particular, the transformation tasks for both nodes and links include (i) predicting their existence, (ii) predicting their label or type, (iii) estimating their weight or importance, and (iv) systematically constructing their relevant features. We motivate our taxonomy through detailed examples and use it to survey and compare competing approaches for each of these tasks. We also discuss general conditions for transforming links, nodes, and features. Finally, we highlight challenges that remain to be addressed

Community Detection in Complex Networks

The stochastic block model is a powerful tool for inferring community structure from network topology. However, the simple block model considers community structure as the only underlying attribute for forming the relational interactions among the nodes, this makes it prefer a Poisson degree distribution within each community, while most real-world networks have a heavy-tailed degree distribution. This is essentially because the simple assumption under the traditional block model is not consistent with some real-world circumstances where factors other than the community memberships such as overall popularity also heavily affect the pattern of the relational interactions. The degree-corrected block model can accommodate arbitrary degree distributions within communities by taking nodes\u27 popularity or degree into account. But since it takes the vertex degrees as parameters rather than generating them, it cannot use them to help it classify the vertices, and its natural generalization to directed graphs cannot even use the orientations of the edges. We developed several variants of the block model with the best of both worlds: they can use vertex degrees and edge orientations in the classification process, while tolerating heavy-tailed degree distributions within communities. We show that for some networks, including synthetic networks and networks of word adjacencies in English text, these new block models achieve a higher accuracy than either standard or degree-corrected block models. Another part of my work is to develop even more generalized block models, which incorporates other attributes of the nodes. Many data sets contain rich information about objects, as well as pairwise relations between them. For instance, in networks of websites, scientific papers, patents and other documents, each node has content consisting of a collection of words, as well as hyperlinks or citations to other nodes. In order to perform inference on such data sets, and make predictions and recommendations, it is useful to have models that are able to capture the processes which generate the text at each node as well as the links between them. Our work combines classic ideas in topic modeling with a variant of the mixed-membership block model recently developed in the statistical physics community. The resulting model has the advantage that its parameters, including the mixture of topics of each document and the resulting overlapping communities, can be inferred with a simple and scalable expectation- maximization algorithm. We test our model on three data sets, performing unsupervised topic classification and link prediction. For both tasks, our model outperforms several existing state-of-the-art methods, achieving higher accuracy with significantly less computation, analyzing a data set with 1.3 million words and 44 thousand links in a few minutes

Embedding Approaches for Relational Data

​Embedding methods for searching latent representations of the data are very important tools for unsupervised and supervised machine learning as well as information visualisation. Over the years, such methods have continually progressed towards the ability to capture and analyse the structure and latent characteristics of larger and more complex data. In this thesis, we examine the problem of developing efficient and reliable embedding methods for revealing, understanding, and exploiting the different aspects of the relational data. We split our work into three pieces, where each deals with a different relational data structure. In the first part, we are handling with the weighted bipartite relational structure. Based on the relational measurements between two groups of heterogeneous objects, our goal is to generate low dimensional representations of these two different types of objects in a unified common space. We propose a novel method that models the embedding of each object type symmetrically to the other type, subject to flexible scale constraints and weighting parameters. The embedding generation relies on an efficient optimisation despatched using matrix decomposition. And we have also proposed a simple way of measuring the conformity between the original object relations and the ones re-estimated from the embeddings, in order to achieve model selection by identifying the optimal model parameters with a simple search procedure. We show that our proposed method achieves consistently better or on-par results on multiple synthetic datasets and real world ones from the text mining domain when compared with existing embedding generation approaches. In the second part of this thesis, we focus on the multi-relational data, where objects are interlinked by various relation types. Embedding approaches are very popular in this field, they typically encode objects and relation types with hidden representations and use the operations between them to compute the positive scalars corresponding to the linkages' likelihood score. In this work, we aim at further improving the existing embedding techniques by taking into account the multiple facets of the different patterns and behaviours of each relation type. To the best of our knowledge, this is the first latent representation model which considers relational representations to be dependent on the objects they relate in this field. The multi-modality of the relation type over different objects is effectively formulated as a projection matrix over the space spanned by the object vectors. Two large benchmark knowledge bases are used to evaluate the performance with respect to the link prediction task. And a new test data partition scheme is proposed to offer a better understanding of the behaviour of a link prediction model. In the last part of this thesis, a much more complex relational structure is considered. In particular, we aim at developing novel embedding methods for jointly modelling the linkage structure and objects' attributes. Traditionally, link prediction task is carried out on either the linkage structure or the objects' attributes, which does not aware of their semantic connections and is insufficient for handling the complex link prediction task. Thus, our goal in this work is to build a reliable model that can fuse both sources of information to improve the link prediction problem. The key idea of our approach is to encode both the linkage validities and the nodes neighbourhood information into embedding-based conditional probabilities. Another important aspect of our proposed algorithm is that we utilise a margin-based contrastive training process for encoding the linkage structure, which relies on a more appropriate assumption and dramatically reduces the number of training links. In the experiments, our proposed method indeed improves the link prediction performance on three citation/hyperlink datasets, when compared with those methods relying on only the nodes' attributes or the linkage structure, and it also achieves much better performances compared with the state-of-arts

Community-Oriented Models and Applications for the Social Web

The past few years have seen the rapid rise of all things "social" on the web from the growth of online social networks like Facebook, to user-contributed content sites like Flickr and YouTube, to social bookmarking services like Delicious, among many others. Whereas traditional approaches to organizing and accessing the web’s massive amount of information have focused on content-based and link-based approaches, these social systems offer rich opportunities for user-based and community-based exploration and analysis of the web by building on the unprecedented access to the interests and perspectives of millions of users. We focus here on the challenge of modeling and mining social bookmarking systems, in which resources are enriched by large-scale socially generated metadata (“tags”) and contextualized by the user communities that are associated with the resources. Our hypothesis is that an underlying social collective intelligence is embedded in the uncoordinated actions of users on social bookmarking services, and that this social collective intelligence can be leveraged for enhanced web-based information discovery and knowledge sharing. Concretely, we posit the existence of underlying implicit communities in these social bookmarking systems that drive the social bookmarking process which can provide a foundation for community-based organization of web resources. To that end, we make three contributions: • First, we propose a pair of novel probabilistic generative models for describing and modeling community-oriented social bookmarking. We show how these models enable effective extraction of meaningful communities over large real world social bookmarking services. • Second, we develop two frameworks for community-based web information browsing and search that are based on these community-oriented social bookmarking models. We show how both achieve improved discovery and exploration of the social web. • Third, we introduce a community evolution framework for studying and analyzing social bookmarking communities over time. We explore the temporal dimension of social bookmarking and explore the dynamics of community formation, evolution, and dissolution. By uncovering implicit communities, putting them to use in an application scenario (search and browsing), and analyzing them over time, this dissertation provides a foundation for the study of how social knowledge networks are self-organized, a deeper understanding and appreciation of the factors impacting collective intelligence, and the creation of new information access algorithms for leveraging these communities