PadChest: A large chest x-ray image dataset with multi-label annotated reports

We present a labeled large-scale, high resolution chest x-ray dataset for the automated exploration of medical images along with their associated reports. This dataset includes more than 160,000 images obtained from 67,000 patients that were interpreted and reported by radiologists at Hospital San Juan Hospital (Spain) from 2009 to 2017, covering six different position views and additional information on image acquisition and patient demography. The reports were labeled with 174 different radiographic findings, 19 differential diagnoses and 104 anatomic locations organized as a hierarchical taxonomy and mapped onto standard Unified Medical Language System (UMLS) terminology. Of these reports, 27% were manually annotated by trained physicians and the remaining set was labeled using a supervised method based on a recurrent neural network with attention mechanisms. The labels generated were then validated in an independent test set achieving a 0.93 Micro-F1 score. To the best of our knowledge, this is one of the largest public chest x-ray database suitable for training supervised models concerning radiographs, and the first to contain radiographic reports in Spanish. The PadChest dataset can be downloaded from http://bimcv.cipf.es/bimcv-projects/padchest/

Sign Spotting using Hierarchical Sequential Patterns with Temporal Intervals

This paper tackles the problem of spotting a set of signs occuring in videos with sequences of signs. To achieve this, we propose to model the spatio-temporal signatures of a sign using an extension of sequential patterns that contain temporal intervals called Sequential Interval Patterns (SIP). We then propose a novel multi-class classifier that organises different sequential interval patterns in a hierarchical tree structure called a Hierarchical SIP Tree (HSP-Tree). This allows one to exploit any subsequence sharing that exists between different SIPs of different classes. Multiple trees are then combined together into a forest of HSP-Trees resulting in a strong classifier that can be used to spot signs. We then show how the HSP-Forest can be used to spot sequences of signs that occur in an input video. We have evaluated the method on both concatenated sequences of isolated signs and continuous sign sequences. We also show that the proposed method is superior in robustness and accuracy to a state of the art sign recogniser when applied to spotting a sequence of signs.This work was funded by the UK government

Towards Accountable AI: Hybrid Human-Machine Analyses for Characterizing System Failure

As machine learning systems move from computer-science laboratories into the open world, their accountability becomes a high priority problem. Accountability requires deep understanding of system behavior and its failures. Current evaluation methods such as single-score error metrics and confusion matrices provide aggregate views of system performance that hide important shortcomings. Understanding details about failures is important for identifying pathways for refinement, communicating the reliability of systems in different settings, and for specifying appropriate human oversight and engagement. Characterization of failures and shortcomings is particularly complex for systems composed of multiple machine learned components. For such systems, existing evaluation methods have limited expressiveness in describing and explaining the relationship among input content, the internal states of system components, and final output quality. We present Pandora, a set of hybrid human-machine methods and tools for describing and explaining system failures. Pandora leverages both human and system-generated observations to summarize conditions of system malfunction with respect to the input content and system architecture. We share results of a case study with a machine learning pipeline for image captioning that show how detailed performance views can be beneficial for analysis and debugging

Low-rank and Sparse Soft Targets to Learn Better DNN Acoustic Models

Conventional deep neural networks (DNN) for speech acoustic modeling rely on Gaussian mixture models (GMM) and hidden Markov model (HMM) to obtain binary class labels as the targets for DNN training. Subword classes in speech recognition systems correspond to context-dependent tied states or senones. The present work addresses some limitations of GMM-HMM senone alignments for DNN training. We hypothesize that the senone probabilities obtained from a DNN trained with binary labels can provide more accurate targets to learn better acoustic models. However, DNN outputs bear inaccuracies which are exhibited as high dimensional unstructured noise, whereas the informative components are structured and low-dimensional. We exploit principle component analysis (PCA) and sparse coding to characterize the senone subspaces. Enhanced probabilities obtained from low-rank and sparse reconstructions are used as soft-targets for DNN acoustic modeling, that also enables training with untranscribed data. Experiments conducted on AMI corpus shows 4.6% relative reduction in word error rate

Decision Tree-based Syntactic Language Modeling

Statistical Language Modeling is an integral part of many natural language processing applications, such as Automatic Speech Recognition (ASR) and Machine Translation. N-gram language models dominate the field, despite having an extremely shallow view of language---a Markov chain of words. In this thesis, we develop and evaluate a joint language model that incorporates syntactic and lexical information in a effort to ``put language back into language modeling.'' Our main goal is to demonstrate that such a model is not only effective but can be made scalable and tractable. We utilize decision trees to tackle the problem of sparse parameter estimation which is exacerbated by the use of syntactic information jointly with word context. While decision trees have been previously applied to language modeling, there has been little analysis of factors affecting decision tree induction and probability estimation for language modeling. In this thesis, we analyze several aspects that affect decision tree-based language modeling, with an emphasis on syntactic language modeling. We then propose improvements to the decision tree induction algorithm based on our analysis, as well as the methods for constructing forest models---models consisting of multiple decision trees. Finally, we evaluate the impact of our syntactic language model on large scale Speech Recognition and Machine Translation tasks. In this thesis, we also address a number of engineering problems associated with the joint syntactic language model in order to make it tractable. Particularly, we propose a novel decoding algorithm that exploits the decision tree structure to eliminate unnecessary computation. We also propose and evaluate an approximation of our syntactic model by word n-grams---the approximation that makes it possible to incorporate our model directly into the CDEC Machine Translation decoder rather than using the model for rescoring hypotheses produced using an n-gram model