Simultaneous Spectral-Spatial Feature Selection and Extraction for Hyperspectral Images

In hyperspectral remote sensing data mining, it is important to take into account of both spectral and spatial information, such as the spectral signature, texture feature and morphological property, to improve the performances, e.g., the image classification accuracy. In a feature representation point of view, a nature approach to handle this situation is to concatenate the spectral and spatial features into a single but high dimensional vector and then apply a certain dimension reduction technique directly on that concatenated vector before feed it into the subsequent classifier. However, multiple features from various domains definitely have different physical meanings and statistical properties, and thus such concatenation hasn't efficiently explore the complementary properties among different features, which should benefit for boost the feature discriminability. Furthermore, it is also difficult to interpret the transformed results of the concatenated vector. Consequently, finding a physically meaningful consensus low dimensional feature representation of original multiple features is still a challenging task. In order to address the these issues, we propose a novel feature learning framework, i.e., the simultaneous spectral-spatial feature selection and extraction algorithm, for hyperspectral images spectral-spatial feature representation and classification. Specifically, the proposed method learns a latent low dimensional subspace by projecting the spectral-spatial feature into a common feature space, where the complementary information has been effectively exploited, and simultaneously, only the most significant original features have been transformed. Encouraging experimental results on three public available hyperspectral remote sensing datasets confirm that our proposed method is effective and efficient

Bidirectional-Convolutional LSTM Based Spectral-Spatial Feature Learning for Hyperspectral Image Classification

This paper proposes a novel deep learning framework named bidirectional-convolutional long short term memory (Bi-CLSTM) network to automatically learn the spectral-spatial feature from hyperspectral images (HSIs). In the network, the issue of spectral feature extraction is considered as a sequence learning problem, and a recurrent connection operator across the spectral domain is used to address it. Meanwhile, inspired from the widely used convolutional neural network (CNN), a convolution operator across the spatial domain is incorporated into the network to extract the spatial feature. Besides, to sufficiently capture the spectral information, a bidirectional recurrent connection is proposed. In the classification phase, the learned features are concatenated into a vector and fed to a softmax classifier via a fully-connected operator. To validate the effectiveness of the proposed Bi-CLSTM framework, we compare it with several state-of-the-art methods, including the CNN framework, on three widely used HSIs. The obtained results show that Bi-CLSTM can improve the classification performance as compared to other methods

Optimized kernel minimum noise fraction transformation for hyperspectral image classification

This paper presents an optimized kernel minimum noise fraction transformation (OKMNF) for feature extraction of hyperspectral imagery. The proposed approach is based on the kernel minimum noise fraction (KMNF) transformation, which is a nonlinear dimensionality reduction method. KMNF can map the original data into a higher dimensional feature space and provide a small number of quality features for classification and some other post processing. Noise estimation is an important component in KMNF. It is often estimated based on a strong relationship between adjacent pixels. However, hyperspectral images have limited spatial resolution and usually have a large number of mixed pixels, which make the spatial information less reliable for noise estimation. It is the main reason that KMNF generally shows unstable performance in feature extraction for classification. To overcome this problem, this paper exploits the use of a more accurate noise estimation method to improve KMNF. We propose two new noise estimation methods accurately. Moreover, we also propose a framework to improve noise estimation, where both spectral and spatial de-correlation are exploited. Experimental results, conducted using a variety of hyperspectral images, indicate that the proposed OKMNF is superior to some other related dimensionality reduction methods in most cases. Compared to the conventional KMNF, the proposed OKMNF benefits significant improvements in overall classification accuracy

Advances in Hyperspectral Image Classification Methods for Vegetation and Agricultural Cropland Studies

Hyperspectral data are becoming more widely available via sensors on airborne and unmanned aerial vehicle (UAV) platforms, as well as proximal platforms. While space-based hyperspectral data continue to be limited in availability, multiple spaceborne Earth-observing missions on traditional platforms are scheduled for launch, and companies are experimenting with small satellites for constellations to observe the Earth, as well as for planetary missions. Land cover mapping via classification is one of the most important applications of hyperspectral remote sensing and will increase in significance as time series of imagery are more readily available. However, while the narrow bands of hyperspectral data provide new opportunities for chemistry-based modeling and mapping, challenges remain. Hyperspectral data are high dimensional, and many bands are highly correlated or irrelevant for a given classification problem. For supervised classification methods, the quantity of training data is typically limited relative to the dimension of the input space. The resulting Hughes phenomenon, often referred to as the curse of dimensionality, increases potential for unstable parameter estimates, overfitting, and poor generalization of classifiers. This is particularly problematic for parametric approaches such as Gaussian maximum likelihoodbased classifiers that have been the backbone of pixel-based multispectral classification methods. This issue has motivated investigation of alternatives, including regularization of the class covariance matrices, ensembles of weak classifiers, development of feature selection and extraction methods, adoption of nonparametric classifiers, and exploration of methods to exploit unlabeled samples via semi-supervised and active learning. Data sets are also quite large, motivating computationally efficient algorithms and implementations. This chapter provides an overview of the recent advances in classification methods for mapping vegetation using hyperspectral data. Three data sets that are used in the hyperspectral classification literature (e.g., Botswana Hyperion satellite data and AVIRIS airborne data over both Kennedy Space Center and Indian Pines) are described in Section 3.2 and used to illustrate methods described in the chapter. An additional high-resolution hyperspectral data set acquired by a SpecTIR sensor on an airborne platform over the Indian Pines area is included to exemplify the use of new deep learning approaches, and a multiplatform example of airborne hyperspectral data is provided to demonstrate transfer learning in hyperspectral image classification. Classical approaches for supervised and unsupervised feature selection and extraction are reviewed in Section 3.3. In particular, nonlinearities exhibited in hyperspectral imagery have motivated development of nonlinear feature extraction methods in manifold learning, which are outlined in Section 3.3.1.4. Spatial context is also important in classification of both natural vegetation with complex textural patterns and large agricultural fields with significant local variability within fields. Approaches to exploit spatial features at both the pixel level (e.g., co-occurrencebased texture and extended morphological attribute profiles [EMAPs]) and integration of segmentation approaches (e.g., HSeg) are discussed in this context in Section 3.3.2. Recently, classification methods that leverage nonparametric methods originating in the machine learning community have grown in popularity. An overview of both widely used and newly emerging approaches, including support vector machines (SVMs), Gaussian mixture models, and deep learning based on convolutional neural networks is provided in Section 3.4. Strategies to exploit unlabeled samples, including active learning and metric learning, which combine feature extraction and augmentation of the pool of training samples in an active learning framework, are outlined in Section 3.5. Integration of image segmentation with classification to accommodate spatial coherence typically observed in vegetation is also explored, including as an integrated active learning system. Exploitation of multisensor strategies for augmenting the pool of training samples is investigated via a transfer learning framework in Section 3.5.1.2. Finally, we look to the future, considering opportunities soon to be provided by new paradigms, as hyperspectral sensing is becoming common at multiple scales from ground-based and airborne autonomous vehicles to manned aircraft and space-based platforms

Advanced imaging and data mining technologies for medical and food safety applications

As one of the most fast-developing research areas, biological imaging and image analysis receive more and more attentions, and have been already widely applied in many scientific fields including medical diagnosis and food safety inspection. To further investigate such a very interesting area, this research is mainly focused on advanced imaging and pattern recognition technologies in both medical and food safety applications, which include 1) noise reduction of ultra-low-dose multi-slice helical CT imaging for early lung cancer screening, and 2) automated discrimination between walnut shell and meat under hyperspectral florescence imaging. In the medical imaging and diagnosis area, because X-ray computed tomography (CT) has been applied to screen large populations for early lung cancer detection during the last decade, more and more attentions have been paid to studying low-dose, even ultra-low-dose X-ray CTs. However, reducing CT radiation exposure inevitably increases the noise level in the sinogram, thereby degrading the quality of reconstructed CT images. Thus, how to reduce the noise levels in the low-dose CT images becomes a meaningful topic. In this research, a nonparametric smoothing method with block based thin plate smoothing splines and the roughness penalty was introduced to restore the ultra-low-dose helical CT raw data, which was acquired under 120 kVp / 10 mAs protocol. The objective thorax image quality evaluation was first conducted to assess the image quality and noise level of proposed method. A web-based subjective evaluation system was also built for the total of 23 radiologists to compare proposed approach with traditional sinogram restoration method. Both objective and subjective evaluation studies showed the effectiveness of proposed thin-plate based nonparametric regression method in sinogram restoration of multi-slice helical ultra-low-dose CT. In food quality inspection area, automated discrimination between walnut shell and meat has become an imperative task in the walnut postharvest processing industry in the U.S. This research developed two hyperspectral fluorescence imaging based approaches, which were capable of differentiating walnut small shell fragments from meat. Firstly, a principal component analysis (PCA) and Gaussian mixture model (PCA-GMM)-based Bayesian classification method was introduced. PCA was used to extract features, and then the optimal number of components in PCA was selected by a cross-validation technique. The PCA-GMM-based Bayesian classifier was further applied to differentiate the walnut shell and meat according to the class-conditional probability and the prior estimated by the Gaussian mixture model. The experimental results showed the effectiveness of this PCA-GMM approach, and an overall 98.2% recognition rate was achieved. Secondly, Gaussian-kernel based Support Vector Machine (SVM) was presented for the walnut shell and meat discrimination in the hyperspectral florescence imagery. SVM was applied to seek an optimal low to high dimensional mapping such that the nonlinear separable input data in the original input data space became separable on the mapped high dimensional space, and hence fulfilled the classification between walnut shell and meat. An overall recognition rate of 98.7% was achieved by this method. Although the hyperspectral fluorescence imaging is capable of differentiating between walnut shell and meat, one persistent problem is how to deal with huge amount of data acquired by the hyperspectral imaging system, and hence improve the efficiency of application system. To solve this problem, an Independent Component Analysis with k-Nearest Neighbor Classifier (ICA-kNN) approach was presented in this research to reduce the data redundancy while not sacrifice the classification performance too much. An overall 90.6% detection rate was achieved given 10 optimal wavelengths, which constituted only 13% of the total acquired hyperspectral image data. In order to further evaluate the proposed method, the classification results of the ICA-kNN approach were also compared to the kNN classifier method alone. The experimental results showed that the ICA-kNN method with fewer wavelengths had the same performance as the kNN classifier alone using information from all 79 wavelengths. This demonstrated the effectiveness of the proposed ICA-kNN method for the hyperspectral band selection in the walnut shell and meat classification

Feature extraction and classification for hyperspectral remote sensing images

Recent advances in sensor technology have led to an increased availability of hyperspectral remote sensing data at very high both spectral and spatial resolutions. Many techniques are developed to explore the spectral information and the spatial information of these data. In particular, feature extraction (FE) aimed at reducing the dimensionality of hyperspectral data while keeping as much spectral information as possible is one of methods to preserve the spectral information, while morphological profile analysis is the most popular methods used to explore the spatial information. Hyperspectral sensors collect information as a set of images represented by hundreds of spectral bands. While offering much richer spectral information than regular RGB and multispectral images, the high dimensional hyperspectal data creates also a challenge for traditional spectral data processing techniques. Conventional classification methods perform poorly on hyperspectral data due to the curse of dimensionality (i.e. the Hughes phenomenon: for a limited number of training samples, the classification accuracy decreases as the dimension increases). Classification techniques in pattern recognition typically assume that there are enough training samples available to obtain reasonably accurate class descriptions in quantitative form. However, the assumption that enough training samples are available to accurately estimate the class description is frequently not satisfied for hyperspectral remote sensing data classification, because the cost of collecting ground-truth of observed data can be considerably difficult and expensive. In contrast, techniques making accurate estimation by using only small training samples can save time and cost considerably. The small sample size problem therefore becomes a very important issue for hyperspectral image classification. Very high-resolution remotely sensed images from urban areas have recently become available. The classification of such images is challenging because urban areas often comprise a large number of different surface materials, and consequently the heterogeneity of urban images is relatively high. Moreover, different information classes can be made up of spectrally similar surface materials. Therefore, it is important to combine spectral and spatial information to improve the classification accuracy. In particular, morphological profile analysis is one of the most popular methods to explore the spatial information of the high resolution remote sensing data. When using morphological profiles (MPs) to explore the spatial information for the classification of hyperspectral data, one should consider three important issues. Firstly, classical morphological openings and closings degrade the object boundaries and deform the object shapes, while the morphological profile by reconstruction leads to some unexpected and undesirable results (e.g. over-reconstruction). Secondly, the generated MPs produce high-dimensional data, which may contain redundant information and create a new challenge for conventional classification methods, especially for the classifiers which are not robust to the Hughes phenomenon. Last but not least, linear features, which are used to construct MPs, lose too much spectral information when extracted from the original hyperspectral data. In order to overcome these problems and improve the classification results, we develop effective feature extraction algorithms and combine morphological features for the classification of hyperspectral remote sensing data. The contributions of this thesis are as follows. As the first contribution of this thesis, a novel semi-supervised local discriminant analysis (SELD) method is proposed for feature extraction in hyperspectral remote sensing imagery, with improved performance in both ill-posed and poor-posed conditions. The proposed method combines unsupervised methods (Local Linear Feature Extraction Methods (LLFE)) and supervised method (Linear Discriminant Analysis (LDA)) in a novel framework without any free parameters. The underlying idea is to design an optimal projection matrix, which preserves the local neighborhood information inferred from unlabeled samples, while simultaneously maximizing the class discrimination of the data inferred from the labeled samples. Our second contribution is the application of morphological profiles with partial reconstruction to explore the spatial information in hyperspectral remote sensing data from the urban areas. Classical morphological openings and closings degrade the object boundaries and deform the object shapes. Morphological openings and closings by reconstruction can avoid this problem, but this process leads to some undesirable effects. Objects expected to disappear at a certain scale remain present when using morphological openings and closings by reconstruction, which means that object size is often incorrectly represented. Morphological profiles with partial reconstruction improve upon both classical MPs and MPs with reconstruction. The shapes of objects are better preserved than classical MPs and the size information is preserved better than in reconstruction MPs. A novel semi-supervised feature extraction framework for dimension reduction of generated morphological profiles is the third contribution of this thesis. The morphological profiles (MPs) with different structuring elements and a range of increasing sizes of morphological operators produce high-dimensional data. These high-dimensional data may contain redundant information and create a new challenge for conventional classification methods, especially for the classifiers which are not robust to the Hughes phenomenon. To the best of our knowledge the use of semi-supervised feature extraction methods for the generated morphological profiles has not been investigated yet. The proposed generalized semi-supervised local discriminant analysis (GSELD) is an extension of SELD with a data-driven parameter. In our fourth contribution, we propose a fast iterative kernel principal component analysis (FIKPCA) to extract features from hyperspectral images. In many applications, linear FE methods, which depend on linear projection, can result in loss of nonlinear properties of the original data after reduction of dimensionality. Traditional nonlinear methods will cause some problems on storage resources and computational load. The proposed method is a kernel version of the Candid Covariance-Free Incremental Principal Component Analysis, which estimates the eigenvectors through iteration. Without performing eigen decomposition on the Gram matrix, our approach can reduce the space complexity and time complexity greatly. Our last contribution constructs MPs with partial reconstruction on nonlinear features. Traditional linear features, on which the morphological profiles usually are built, lose too much spectral information. Nonlinear features are more suitable to describe higher order complex and nonlinear distributions. In particular, kernel principal components are among the nonlinear features we used to built MPs with partial reconstruction, which led to significant improvement in terms of classification accuracies. The experimental analysis performed with the novel techniques developed in this thesis demonstrates an improvement in terms of accuracies in different fields of application when compared to other state of the art methods